Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04457 ATGGACGAAGATTTGTTGAAGCGTAACACAGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGAAGAGTGTGAGTATAGGCACCATGAGATTGCGAGGCTTAACCCGAGGGATTGTTGGTACTGGTTATCGGGGAATTGTCTTAATCCGACTTGTGCTTTTAGACACCCTCCATTGGATGGGCATGCTGGAGTGCCATCTGAACCTGCGCAATCTTCGCTACCTGCAACTGCAAATAAGACAATGGTTCCCTGTTATTTCTTCTTCAATGGGTTTTGCAACAAAGGTAACAGATGCTCATTTTTGCACGGGACTGATGCTAGCTTGCTCGCTGTAAAGCCTTTGAAGAATGATAATGTAAAGCCTCTGAAGAATGACAATGGAAGCATTAATGCACTCAACAACATAGAAAACAAAACTTCAGGAAATAAAACAGTTGCATCAAAACCAAGCGAAACACATTTTGACCAACCTTTATCTGCTCCAAAAGCATTGTCTGATATTAAACTTCAGCCTAAGGAAGATCTTCAGCTACCATTACCCAAAAATGTTAAACAGAAAGATGATTGCTTGGAATTATCTGCTTTTGACTATAAAGAAGCTCCCTCGACTCGGTCAGACTCTCCGTTACCAGATGATGACTATGCTCATAACAAGTCTCAGTCAAGTACTGAGCAGAGTTCAGAGGAGCAGGAAGATAGTCATGTAGAGCCTGAGGAGCGATGGGAATCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACCTGGGTTATGAGAATAATTCTGAATATTTGCCAGTGCTTGATATGAATGATCATGAACTGAATGAGCAATACTCGGGGTATGAACTTAAAAATACAGATGAGTACAACACCATGTGCTCGGACACTGATATTCTGTATGAACAGGGAACATGTGATGATTACAGATGTTTTGATAGAGATTTTACTAGTGCCAATGAAAGGAAAGTTTGTGGTTATTCCAGAGAGATAGTATTAGATTCTATATTTTCCAGGAAAAGGGTTCGGATGTCAGCTGCTGAGATGGCTGATTATGACTCTGACTTAGATCTACGTGACCATCTGAGAAGACGCAGAGGGGTCAATGACCCCCCTGTCACAGGTTTCTTAAGAAGACATGAGTCGTCTTCTTTGATGGTTCGAAACCGAGAAAGGCATCAATGGCAAGGCATTGGTCAGCGGCAAAACAAAAGATTAACATCACAATTGGGATTTAGTTCAATCAGCGAGGTTAAAGATCTTTCAATTGCTAACAAGCAGAGATTATTTAGGCCTTCCCAACAAAATAGGCCAATAAACCATTATAGAGAAAAACCAGCTAAACGGCCATTTCATTCATCTAAAAAAAAAGTATCCAGGAAACCAGTTGTGAAGCAACGGAACTTTATCCAGGAACCTGGTACATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAAGATGAAGGCTGGTAAAAGTTCACACTGTGAAAGCTCCTCAGCTGGTTTCAAGAATCCCGAACCTCTGCACGAGATTCTTAAAGACAGAAGGACCACGGATTGA 1590 0.4157 MDEDLLKRNTDCVYFLASPLTCKKGEECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDGHAGVPSEPAQSSLPATANKTMVPCYFFFNGFCNKGNRCSFLHGTDASLLAVKPLKNDNVKPLKNDNGSINALNNIENKTSGNKTVASKPSETHFDQPLSAPKALSDIKLQPKEDLQLPLPKNVKQKDDCLELSAFDYKEAPSTRSDSPLPDDDYAHNKSQSSTEQSSEEQEDSHVEPEERWESSPGFDVLVHDESGNLGYENNSEYLPVLDMNDHELNEQYSGYELKNTDEYNTMCSDTDILYEQGTCDDYRCFDRDFTSANERKVCGYSREIVLDSIFSRKRVRMSAAEMADYDSDLDLRDHLRRRRGVNDPPVTGFLRRHESSSLMVRNRERHQWQGIGQRQNKRLTSQLGFSSISEVKDLSIANKQRLFRPSQQNRPINHYREKPAKRPFHSSKKKVSRKPVVKQRNFIQEPGTFSGPKTLAEIKEEKMKAGKSSHCESSSAGFKNPEPLHEILKDRRTTD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04457 529 MobiDBLite consensus disorder prediction 202 250 - -
Trre15g04457 529 Gene3D - 3 63 - -
Trre15g04457 529 Gene3D - 75 147 - -
Trre15g04457 529 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Trre15g04457 529 MobiDBLite consensus disorder prediction 453 529 - -
Trre15g04457 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 108 IPR000571 GO:0046872
Trre15g04457 529 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Trre15g04457 529 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 528 - -
Trre15g04457 529 Pfam Zinc-finger containing family 7 63 IPR041686 -
Trre15g04457 529 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Trre15g04457 529 MobiDBLite consensus disorder prediction 455 470 - -
Trre15g04457 529 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Trre15g04457 529 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Trre15g04457 529 MobiDBLite consensus disorder prediction 230 250 - -
Trre15g04457 529 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Trre15g04457 529 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Trre15g04457 529 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Trre15g04457 529 MobiDBLite consensus disorder prediction 126 159 - -
Trre15g04457 529 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04457 Trre-Chr15 55308382 55311316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g04457 zf-CCCH_3 6.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04457 - - aprc:113847503 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04457 15 55308382 55311316 Trre15g04457 15 55308382 55311316 ECH