Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04452 ATGATTGGTAACAATCGTTCCGATGCATTGCCATGCCCTCCTCCTAGGATGATACAGCCTCCATCTCAAACGAACAGAGGAACTGGTTACCTTTTCTACAAGACCCGAGAATGTACCAAGTTCAGTTTGGGCAGTTGTAGGAACGGTGACAATTGCAACTTTGCTCATGGGAAGGAGGAGCTAAGGCAGCCACCACCAAATTGGCAGGAGCTTGTTGGTATCCGCAACGATCGCAAGGAGGAACGGTTGCAGGTGGGGAACTGGGATGATGATAAAAAAATCATCCAGAAGATGAAGCTGTGTAAGAAGTTTTACAATGGTGAGCAGTGTCCTTACGGTGAGAAGTGTAGTTTTCTTCATGAAGATCCTGCTAAGTTTAGGGCTGATTCTTGGAAATCAAGAGAGTGTTCTGTAATAAGCATTGGGACTATTGGTTCCCCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCAATAGTGGTGTGACCAAGCAACCAAAGGGCACTTTTTGGAAGACTAAGCTGTGTACCAGGTGGCAGAATACTGGAAGCTGTTCCTTTGGAGTGGACTGTCACTTTGCTCATGGAGAAGCAGATTTACAAGCTCCTGGTGTAGGCATTGAAGCTGAAGCTGCAGTTGCCATAGCAAATTCCACACAAGCTACCGTTCCAGCTTCACCAAATGCCTTATCAGTTTCTGCCAATGTTGAACCTGCTGCCCTCCCAGCAAGAGTACCTATGGAAATGGATGAGAAAGGTAAGAAGCCTGTGGAATTGGATGAGAAAGCTAAGAAGATCTTGTCAAGAATCGGAGCAAAGAAAAACAGGCTGTTTCCCATGTATGCTGACTGGGTTAATGATATAGGTCCTATTCTTCCCGACTCTCCTCCAAGTCCAATGGAAAGTTGA 912 0.4572 MIGNNRSDALPCPPPRMIQPPSQTNRGTGYLFYKTRECTKFSLGSCRNGDNCNFAHGKEELRQPPPNWQELVGIRNDRKEERLQVGNWDDDKKIIQKMKLCKKFYNGEQCPYGEKCSFLHEDPAKFRADSWKSRECSVISIGTIGSPKSFGDGSDNLEGNSGVTKQPKGTFWKTKLCTRWQNTGSCSFGVDCHFAHGEADLQAPGVGIEAEAAVAIANSTQATVPASPNALSVSANVEPAALPARVPMEMDEKGKKPVELDEKAKKILSRIGAKKNRLFPMYADWVNDIGPILPDSPPSPMES 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04452 303 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Trre15g04452 303 Pfam CCCH-type zinc finger 99 120 IPR041367 -
Trre15g04452 303 SUPERFAMILY CCCH zinc finger 30 63 IPR036855 GO:0046872
Trre15g04452 303 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Trre15g04452 303 PANTHER CCCH ZINC FINGER/TIS11-RELATED 26 125 IPR045877 GO:0003729
Trre15g04452 303 SUPERFAMILY CCCH zinc finger 170 202 IPR036855 GO:0046872
Trre15g04452 303 ProSiteProfiles Zinc finger C3H1-type profile. 171 199 IPR000571 GO:0046872
Trre15g04452 303 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Trre15g04452 303 SMART c3hfinal6 171 198 IPR000571 GO:0046872
Trre15g04452 303 SMART c3hfinal6 32 58 IPR000571 GO:0046872
Trre15g04452 303 FunFam Zinc finger CCCH domain-containing protein 28 63 - -
Trre15g04452 303 SUPERFAMILY CCCH zinc finger 95 122 IPR036855 GO:0046872
Trre15g04452 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 198 IPR000571 GO:0046872
Trre15g04452 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Trre15g04452 303 FunFam Zinc finger CCCH domain-containing protein 39 92 124 - -
Trre15g04452 303 Gene3D - 95 124 - -
Trre15g04452 303 Gene3D - 164 203 - -
Trre15g04452 303 Gene3D - 28 63 - -
Trre15g04452 303 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g04452 303 FunFam Zinc finger CCCH domain-containing protein 166 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04452 Trre-Chr15 55279842 55282618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04452 34 120 C3H Transcription Factor Family AT1G68200 32.955 9.62e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g04452 zf-CCCH 2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04452 - - tpra:123881739 509.99