Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04445 ATGCTTCCTCTACTTCGTTTTTTCTACCTCAAAAGAATCCATCGTTGGTTTTCTGAGCTCGAGGAGAATGAACGGATCAACTTTACTATGGTTCGCATTGCAAGGATGATGTGGGTTTGTTATTTGGTTTGCCACTATGGTGGATGTGTTTTCTACCTTATGGCGACATTTCATGTTCATGTTGAGAACACTTGGTTTTCCCTAGTTGATCTTAACTTCGTCACGCTAGGATTAATGAACAAATATGTGACTTCTATGTATTATGCTGTGATTTCTTTCACCACTGTTGGGTATGGCGATTTGCATCCGGTTTATATCGATGAGAAAGTATTTTCCGTGATCTTTCTTTTAGCCGACTTTGGACTTGTAGCATATGTCGCAACTACTATCGTTTATTTAGTTGCTCCTGACGTTGGTCCACTGGGAAAATATAGAGCACGTCGAGCGCGTGTATTAGGATTTTGTCGACAGAATGGATTACCTGATGAGCTTTGTATTGAGGTGTCATCTCACCTTAAACAAGAGTACTTATCACAATCACATTCATTTGAAGAAAGTAGTATTATGGAATCACTGCCCACAACAATTAAAAAAAATATTTTAATTGCTTTGTCTAATGCGGTGAAAAATAACATCCTGTTTAATCATTTGACAAATTCTACACAATTTCAACTGATACAAGCGATGGAGCCCGTATTCTTTCCGGCTGGTACAAGTATAATCCTAGAGAATGAAGCACCGACGTTTTTGTATTTTGTTGTAAGAGGTTTTGTGGACTTAATACCTCCTGGGAATTTTGAAAATGAAGATACTGTCATAATAACGGTCGGACCCGGAGAAGTTTTCGGTGAAACTTGCCTATTTTTCAATACACCTCAAGTTTTTGCCGCTACAGCTAGAGAATCGAGTCACCTTCTCATGTTGGATCGAGTGAAACTCTTGAACATTCTGGAGGGCTGTGTGAACGATACATCTCGGATGATAAGTGACTACATTCAGGCTTTAGAAGCGAACAACAATCCATACATGAATAGACTTCTGTTGGATTTTGAAAAGAGAGCAGAAATTGGTAATATTGATCTTCCAGTAAGCTTGTGGTTTGCGCTCAATAGAAGATATTATCGGTTGTTTGATATACTGGTTGAAAAATATCAAGATCCAAATGGGTGTGACATAAAAGGGCGGACAGCTATGCACCTAGCAGCATCAAGGGGAGACCTTGAGAAGGTTAACATGCTACTTAGAATTGGGGCAGATCCAAATTTAAAAGATTTGGCCGGCATTGTCCCGCTTTGGAACGCCATGCTTGGTAGGCATGCAAATGTAGTACAAGCCTTGGAGTACTATGGATGTACTTTAAAAAGTTGTCATCTTGGAAAGTATGCATATATTGTGGCTTCACGAGGCGACATGGATCTGCTACAAACTATTGGCCAGGAAAATGTTCAGTTTCTTTCTGCCCAAAATTTCCACAAGGAAACAGCATTACATGCGGCTGTGTATCTAGGCGACTTTCCTATGATTCAATATCTTGTGGAAATGGGTGTGCAGATTATTCAAAAGGACGTTCATGGTCATAGCCCATTAAGCCTGGCACAGATACATGGTGATGAAGAAATTCAAAACTATTTGGTGGAAAGAGCATCGTTACATGAGGTTGTGGTTCAAAACAACTTTCCTATGGTTCAATATCTCGTGGAAAGGGGTGTACCAATCGATCAAAATGACGTTCATGGTAATAGCCCATATGGCCTGGCACAAATACATGGTGGTGAAGAAATTCGAAACTATTTGGAGGGAAAAATGGAGGAAAAAGCAATGTTATTCGATCAATTTTTTTAG 1842 0.3958 MLPLLRFFYLKRIHRWFSELEENERINFTMVRIARMMWVCYLVCHYGGCVFYLMATFHVHVENTWFSLVDLNFVTLGLMNKYVTSMYYAVISFTTVGYGDLHPVYIDEKVFSVIFLLADFGLVAYVATTIVYLVAPDVGPLGKYRARRARVLGFCRQNGLPDELCIEVSSHLKQEYLSQSHSFEESSIMESLPTTIKKNILIALSNAVKNNILFNHLTNSTQFQLIQAMEPVFFPAGTSIILENEAPTFLYFVVRGFVDLIPPGNFENEDTVIITVGPGEVFGETCLFFNTPQVFAATARESSHLLMLDRVKLLNILEGCVNDTSRMISDYIQALEANNNPYMNRLLLDFEKRAEIGNIDLPVSLWFALNRRYYRLFDILVEKYQDPNGCDIKGRTAMHLAASRGDLEKVNMLLRIGADPNLKDLAGIVPLWNAMLGRHANVVQALEYYGCTLKSCHLGKYAYIVASRGDMDLLQTIGQENVQFLSAQNFHKETALHAAVYLGDFPMIQYLVEMGVQIIQKDVHGHSPLSLAQIHGDEEIQNYLVERASLHEVVVQNNFPMVQYLVERGVPIDQNDVHGNSPYGLAQIHGGEEIRNYLEGKMEEKAMLFDQFF 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04445 613 Gene3D - 464 608 IPR036770 -
Trre15g04445 613 ProSiteProfiles Ankyrin repeat profile. 491 523 IPR002110 GO:0005515
Trre15g04445 613 SMART ANK_2a 545 574 IPR002110 GO:0005515
Trre15g04445 613 SMART ANK_2a 491 520 IPR002110 GO:0005515
Trre15g04445 613 SMART ANK_2a 426 455 IPR002110 GO:0005515
Trre15g04445 613 SMART ANK_2a 393 422 IPR002110 GO:0005515
Trre15g04445 613 CDD CAP_ED 213 328 IPR000595 -
Trre15g04445 613 SUPERFAMILY Ankyrin repeat 338 599 IPR036770 -
Trre15g04445 613 ProSiteProfiles Ankyrin repeat region circular profile. 393 424 - -
Trre15g04445 613 Gene3D Jelly Rolls 178 341 IPR014710 -
Trre15g04445 613 ProSiteProfiles Ankyrin repeat region circular profile. 491 522 - -
Trre15g04445 613 ProSiteProfiles Ankyrin repeat profile. 393 425 IPR002110 GO:0005515
Trre15g04445 613 SUPERFAMILY Voltage-gated potassium channels 5 164 - -
Trre15g04445 613 PANTHER POTASSIUM CHANNEL AKT1 2 546 IPR045319 GO:0005249|GO:0006813
Trre15g04445 613 Gene3D - 362 463 IPR036770 -
Trre15g04445 613 SUPERFAMILY cAMP-binding domain-like 143 327 IPR018490 -
Trre15g04445 613 Gene3D - 1 135 - -
Trre15g04445 613 Pfam Ion channel 80 131 IPR013099 -
Trre15g04445 613 Pfam Cyclic nucleotide-binding domain 232 318 IPR000595 -
Trre15g04445 613 Pfam Ankyrin repeats (3 copies) 484 549 IPR002110 GO:0005515
Trre15g04445 613 Pfam Ankyrin repeats (3 copies) 334 424 IPR002110 GO:0005515
Trre15g04445 613 SMART cnmp_10 213 332 IPR000595 -
Trre15g04445 613 ProSiteProfiles cAMP/cGMP binding motif profile. 213 334 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04445 Trre-Chr15 55226627 55230036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04445 4 552 Ion Channels AT2G26650 32.909 5.17e-101 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04445 K21867 - egt:105975303 350.132