LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g04429	ATGACAACCACCAACACACCTTACAGAGATGAACCAGATTACGACAGCAGCTCCTCCTCCATCACCGTACCGGAATCAACCAGAAGCTGGATGAGCAACCTCAGCTTCGGAAGCCGCCGTCGCCGTAGCTCCGTCTCCGTTTCTTCCACAACCACATACACCTCATCACTATTAGGTTCCAACGCTAAACCTCACAAAGCAAACCAAGTTGCATGGGAAGCCATGAGCAGACTCCGACTCGACAAAGGTCGAGTCGGACTCGACCACTTCCGACTGTTAAAAAGACTCGGAAGTGGCGATATAGGGAATGTGTACCTTTGTCAAATAAGAAACCCTGTGGTAGGTTTACCACAGTGTTTTTATGCTATGAAAGTTATTGATAGAGAAGCACTTGCTATAAGGAAGAAGCTTCAAAGAGCAGAAATGGAGAAAGAGATTTTGGGTATGCTTGATCATCCTTTTTTGCCTACTTTGTACACCGAGTTTGATGCTTCTCATTACTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTTCTCGCCAACGCCAGCCTGGGAAGCGCTTTTCCTTATCATCCGCTAAGTTTTATGCAGCTGAGACACTATTGGCACTAGAATATCTACACATGATGGGAATAGTATACAGAGATTTAAAGCCAGAGAATGTTTTAGTAAGAGAAGATGGACACATAATGCTTTCAGATTTTGATCTTTCACTTAAATGTGACGTAGTTCCAAAGCTCTTAAGAAACAAAACAAGATTAGAAAGAAGCATCAAAACTACAACAAGAAAATCTTCAACACCTTGTATTTCTCCCATGCAACCAGTTTTGTCTTGTTTCTTATCATCATCAACAAAGAAAAAGAAAACAACACTTGAAACAGTTATAAGAGAAAATGTTCAAGAAGAGTTTGAGGTTGATCTTGATCCTGATTTTGTAGCTGAACCAATTGATGCAAGATCAAAATCATTTGTTGGAACACATGAATATTTAGCACCAGAAGTTATTTTAGGACAAGGTCATGGAAGTGCTGTAGATTGGTGGACATTTGGTGTTTTTTTGTATGAAATGTTATATGGAAGAACACCATTTAAAGGTGAAAACAATGAGAAAACATTGGTCAACATTTTGAAACAACCTTTGACTTTTCCTAGGATTGGTGTTAGTAATAGTAATGAGTTTGAAGAGATGGTCAAAGTTCAAGATCTTATAAGTAAATTATTGGTGAAGAATCCTAATAAGAGAATTGGAAGTTGTTTGGGTTCAGTTGAGATTAAAAGACATGAATTTTTTAAAGGTGTGAATTGGGCTTTGATTAGATCTGTTAGACCCCCTGAGGTTCCTAGTGATAAGAATAAGATTAGGAATAGGGTTTTGGTACCTAAGTTAAGCAAGAAAGAAAGAGATCAACCATTTCAGCTCAAACGTCAATTTGATTACTTCTGA	1458	0.3868	MTTTNTPYRDEPDYDSSSSSITVPESTRSWMSNLSFGSRRRRSSVSVSSTTTYTSSLLGSNAKPHKANQVAWEAMSRLRLDKGRVGLDHFRLLKRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVIDREALAIRKKLQRAEMEKEILGMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYASRQRQPGKRFSLSSAKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRNKTRLERSIKTTTRKSSTPCISPMQPVLSCFLSSSTKKKKTTLETVIRENVQEEFEVDLDPDFVAEPIDARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLTFPRIGVSNSNEFEEMVKVQDLISKLLVKNPNKRIGSCLGSVEIKRHEFFKGVNWALIRSVRPPEVPSDKNKIRNRVLVPKLSKKERDQPFQLKRQFDYF	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g04429	485	SMART	serkin_6	90	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04429	485	FunFam	protein kinase PINOID	175	243	-	-
	Trre15g04429	485	FunFam	serine/threonine-protein kinase D6PK-like	323	453	-	-
	Trre15g04429	485	MobiDBLite	consensus disorder prediction	1	23	-	-
	Trre15g04429	485	Pfam	Protein kinase domain	325	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04429	485	Pfam	Protein kinase domain	91	245	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04429	485	Gene3D	Transferase(Phosphotransferase) domain 1	324	453	-	-
	Trre15g04429	485	CDD	STKc_phototropin_like	88	452	-	-
	Trre15g04429	485	Gene3D	Phosphorylase Kinase; domain 1	87	177	-	-
	Trre15g04429	485	PANTHER	FLIPPASE KINASE 1-RELATED	37	457	-	-
	Trre15g04429	485	ProSiteProfiles	Protein kinase domain profile.	90	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04429	485	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	216	228	IPR008271	GO:0004672\|GO:0006468
	Trre15g04429	485	FunFam	protein kinase PINOID 2	88	174	-	-
	Trre15g04429	485	SUPERFAMILY	Protein kinase-like (PK-like)	72	453	IPR011009	-
	Trre15g04429	485	Coils	Coil	123	143	-	-
	Trre15g04429	485	Gene3D	Transferase(Phosphotransferase) domain 1	178	243	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g04429	Trre-Chr15	55013342	55015363	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g04429	1	485	AGC Kinase Gene Family	AT2G26700	58.845	0.0	588

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trre15g04429		Pkinase	2.5e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g04429	K08286		-	gmx:100777988	758.829