Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04423 ATGGAAGACAGAAAAGTACACACGATTGCTGTTATATCAGTAATATCCTTAATCATTGTGATCATCATTTGTCGTGTTTCCTTAAAACTCTCAAAAGCTTTCTTCTTAATCTGCGGCGCATCAATCGCAATAATTCTTGCTGTCTTTTCATGTTTACTCATAAGACAACGTTACAACAACAGAAGAAAAGTGTTGGAATCACAGTTAAAATCAGAAGGTCGTGAGCTTCGAATCGAGTACAGTTTCTTAAGAAAAATTGCAGGTGTACCGACAAAATATCGATACAAAGAGCTCGAAGAAGCAACCGATGATTTTCGTGCGGTAATCGGTAAAGGGTCATCAGGTTCAGTTTTCAAAGGCATTTTGAATGATGGAACTTCAGTTGCAGTGAAAAGAATTCTTGGTGAAGAAAGAGGTGAGAGAGAATTTAGATCAGAAGTTTCAGCTATTGCTAGTGTTCAACATGTTAATCTTGTTAGACTTTTTGGTTATTGTAATTCACCAACACCACCTAGATATCTTGTTTATGAGTTTATTCCAAATGGTTCATTAGATTGTTGGATTTTTCCTATGAAACAAACAAGGACACGTAGATGTGGTTGTTTACCTTGGAATTTAAGGTATAATGTTGCTATTGATGTTGCAAAAGCATTAAGTTATCTTCATCATGATTGTAGATCTAGAATTTTACATCTTGATGTGAAACCAGAGAATATTTTACTTGATGAAAATTATAAAGCACTTGTTGCTGATTTTGGTCTTTCAAAGCTTGTTGGAAAAGATGAGAGTCAAGTTATGACAACAATAAGAGGAACTAGAGGCTATTTAGCACCTGAATGGTTATTAGAACGTGGAATTTCTGAGAAAAGTGATATTTATAGTTATGGTATGGTTTTGTTAGAGATGGTTGGAGGGAGAAGAAATGTTTATAAAGTAGAAGATCCTAAAGATAAAACTAAGAAAAAGTGGCAATTTTTTCCTAAGATTGTGAATGAGAAATTAAGAGAAGGGAAATTGATGGAAATTGTGGATCAAAGGGTAGTAGAAAGTGGGAATTTTGATGAGAATGAAGTGAAAAGATTAGTGTTTATTGCTTTATGGTGTATACAAGAGAAACCAAGATTAAGACCTAGTATGGTTGAAGTTGTTGATATGCTTGAAGGACGTGTGAGTGTGGAAGAGCCACCAGGTACTAGAATGATTCTTGTTGATATGTTAGCTGATGATGAAGATCCTACAGATCATAATAATTTAGCTAGGTTATTGACTCCTGTGTCTAGTAATGTTGAATGTACCAGTAATTACTCTTTAGGATCCACTATTTTCTCTGGTAGATAA 1338 0.3445 MEDRKVHTIAVISVISLIIVIIICRVSLKLSKAFFLICGASIAIILAVFSCLLIRQRYNNRRKVLESQLKSEGRELRIEYSFLRKIAGVPTKYRYKELEEATDDFRAVIGKGSSGSVFKGILNDGTSVAVKRILGEERGEREFRSEVSAIASVQHVNLVRLFGYCNSPTPPRYLVYEFIPNGSLDCWIFPMKQTRTRRCGCLPWNLRYNVAIDVAKALSYLHHDCRSRILHLDVKPENILLDENYKALVADFGLSKLVGKDESQVMTTIRGTRGYLAPEWLLERGISEKSDIYSYGMVLLEMVGGRRNVYKVEDPKDKTKKKWQFFPKIVNEKLREGKLMEIVDQRVVESGNFDENEVKRLVFIALWCIQEKPRLRPSMVEVVDMLEGRVSVEEPPGTRMILVDMLADDEDPTDHNNLARLLTPVSSNVECTSNYSLGSTIFSGR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04423 445 SUPERFAMILY Protein kinase-like (PK-like) 85 387 IPR011009 -
Trre15g04423 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Trre15g04423 445 ProSiteProfiles Protein kinase domain profile. 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04423 445 Gene3D Transferase(Phosphotransferase) domain 1 179 395 - -
Trre15g04423 445 Coils Coil 55 75 - -
Trre15g04423 445 SMART serkin_6 103 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04423 445 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Trre15g04423 445 FunFam Putative receptor-like protein kinase 70 178 - -
Trre15g04423 445 Pfam Protein kinase domain 108 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04423 445 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Trre15g04423 445 PANTHER OS07G0415500 PROTEIN 29 397 - -
Trre15g04423 445 FunFam Putative receptor-like protein kinase 179 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04423 Trre-Chr15 54977982 54979319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04423 1 398 Receptor kinase-like Gene Family AT5G20050 66.584 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre15g04423 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04423 - - gmx:100779485 715.301