Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04414 ATGACTAACTTAGTCGTCCATGGCACAAGTCGAACTAGAAAATTCAGGGATACCATACAAGCTGCATCGAGTTTTGCTCAAAGGAACCAATTACCCCCTCGTTTACAAGATCAAATGCTTGCGCACTTGTGTTTGAAGTTTAGAACAGACTCAGAGGGGTTGCAGCAACAAGAGACGCTCGATTCGCTTCCTAAAGCCATTAGATCAAGCATTTCACATCATCTTTTCTATTCTTTGATGGATAAGGTCTACTTATTTAAAGGAGTTTCAAATGATTTGCTCTTTCAATTGGTATCGGAGATGAAGCCAGAGTATTTTCCGCCTAAAGAAGATGTTATCTTACAAAACGAAGCTCCAACTGATTTTTACATTCTAGTCACTGGTGCTGTGGACTTAATAGTTCTCAAAGGCGGTGTTGAACAGGTTGTTGGGGAGGCAAAAACCGGAGAACTTTGTGGCGAGATTGGAGTCCTTTGCTATAAGCCGCAACATTTTACAGTTAGAACCAAGCGATTAAGTCAATTGTTGAGGCTGAACCGTACCACTTTCTTGAATATTGTTCAGGCTAATGTCGGCGATGGAACAATAATAATGAATAATCTTCTTCAGCATTTGAAAGACCTTAATGATCCAATCATGGAGGGAGTTTTAGTAGAGACTGAGAACATGTTAGCTCGTGGTAGAATGGACCTACCAGTTAGTCTATGTTTTGCAGCAGCAAGAGGAGATGATTTATTGTTACAACAATTGTTGAAAAGGGGTTTGGATCCAAATGAATCAGATAACAATGGAAGAACAGCTTTGCATATAGCAGCATGTAAAGGAAAAGAAAATTGTGTTTTACTTCTCTTGGATTATGGGGCGAATCCGAATATTAGAGATTCGGATGGAAATGTAGCACTGTGGGAAGCTATACTTGGTGAACATGAATCAGTGATCAAAATTTTGGTAGAAAATGGTGCCACATTGCAAAGTGGTGATATTGGTCAATATGCATGCAGTGCAGTTGAACAAAATAATCTGAATTTGTTGCAAGCGATTATGCGTTACGGTGGAGATATCACACTTCCAAATACTAGCGTTGGAACTACGGCTTTACACGTGGCAGTGTCCGAAGACAACGCCGAAATTGTCAAATTCCTCTTAGATCATGGAGCTAACATGGACAAACAAGACAAATATGGTTGGAGTCCAAGAGCTTTAGCTGATCAACAAGGACATGCCGAAATCAAAGCCATTTTTGAAGACAAAGGAGAACAACCTAAGATTCAATCTTTTGTTTCTATGCCTATTCCTGAGAGGCAGGGTAGTGGTACTACTAAGGTGAGGTACCTTGGTAGATTTACAAGTGAGCCAACAATGCCTATAGTTCAAGATGGATCATTTCATGGAAACGATAATGGTTCGTGGATGCAACAACGTCCGAGGCGTAGGAATAATAACTTTCATAACTCACTCTTCGGGATAATGTCGGCGGCACACAAAGGAGAAAATGATCAGTTTTTCAATGTTAAGATGAATAATAATGCAAGGAATGGTATGAAGAATATTGCGCGTCCGACTAGAGTAATCATTAGTTGTCCTGAAAAAGGTGAGATTGCTGGGAAGCTTGTATTGCTACCTGAAAGTTTTAAAGAGTTACTTGAGATTGGAGCTAAGAAGTTTGGTATAGTTGTTACTAAGGTTGTTTGCAAAGATGGAGCAGAAATTGATGATATTGAGGTCATAAGAGATGGTGATCATCTTGTTTTTGTTGGTGATGGTGGGGAGCTAGATTCTAATTGTCCAACAAGACACTCTAATGATGTCATTCAATAG 1818 0.3966 MTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHHLFYSLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLIVLKGGVEQVVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLNDPIMEGVLVETENMLARGRMDLPVSLCFAAARGDDLLLQQLLKRGLDPNESDNNGRTALHIAACKGKENCVLLLLDYGANPNIRDSDGNVALWEAILGEHESVIKILVENGATLQSGDIGQYACSAVEQNNLNLLQAIMRYGGDITLPNTSVGTTALHVAVSEDNAEIVKFLLDHGANMDKQDKYGWSPRALADQQGHAEIKAIFEDKGEQPKIQSFVSMPIPERQGSGTTKVRYLGRFTSEPTMPIVQDGSFHGNDNGSWMQQRPRRRNNNFHNSLFGIMSAAHKGENDQFFNVKMNNNARNGMKNIARPTRVIISCPEKGEIAGKLVLLPESFKELLEIGAKKFGIVVTKVVCKDGAEIDDIEVIRDGDHLVFVGDGGELDSNCPTRHSNDVIQ 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04414 605 ProSiteProfiles Ankyrin repeat profile. 263 295 IPR002110 GO:0005515
Trre15g04414 605 Pfam Ankyrin repeats (3 copies) 235 324 IPR002110 GO:0005515
Trre15g04414 605 Pfam Ankyrin repeats (3 copies) 335 410 IPR002110 GO:0005515
Trre15g04414 605 Pfam KHA, dimerisation domain of potassium ion channel 522 584 IPR021789 -
Trre15g04414 605 ProSiteProfiles KHA domain profile. 522 602 IPR021789 -
Trre15g04414 605 SUPERFAMILY Ankyrin repeat 234 418 IPR036770 -
Trre15g04414 605 SMART cnmp_10 85 202 IPR000595 -
Trre15g04414 605 SMART ANK_2a 296 325 IPR002110 GO:0005515
Trre15g04414 605 SMART ANK_2a 263 292 IPR002110 GO:0005515
Trre15g04414 605 SMART ANK_2a 361 390 IPR002110 GO:0005515
Trre15g04414 605 SMART ANK_2a 327 356 IPR002110 GO:0005515
Trre15g04414 605 SMART ANK_2a 230 259 IPR002110 GO:0005515
Trre15g04414 605 ProSiteProfiles Ankyrin repeat profile. 361 393 IPR002110 GO:0005515
Trre15g04414 605 ProSiteProfiles Ankyrin repeat profile. 296 328 IPR002110 GO:0005515
Trre15g04414 605 ProSiteProfiles cAMP/cGMP binding motif profile. 85 187 IPR000595 -
Trre15g04414 605 Gene3D - 231 416 IPR036770 -
Trre15g04414 605 PANTHER POTASSIUM CHANNEL AKT1 1 586 IPR045319 GO:0005249|GO:0006813
Trre15g04414 605 Pfam Cyclic nucleotide-binding domain 104 189 IPR000595 -
Trre15g04414 605 ProSiteProfiles Ankyrin repeat region circular profile. 361 393 - -
Trre15g04414 605 Gene3D Jelly Rolls 49 209 IPR014710 -
Trre15g04414 605 CDD CAP_ED 85 190 IPR000595 -
Trre15g04414 605 FunFam Potassium channel KAT2 73 209 - -
Trre15g04414 605 PRINTS Ankyrin repeat signature 377 391 IPR002110 GO:0005515
Trre15g04414 605 PRINTS Ankyrin repeat signature 264 279 IPR002110 GO:0005515
Trre15g04414 605 SUPERFAMILY cAMP-binding domain-like 10 205 IPR018490 -
Trre15g04414 605 ProSiteProfiles Ankyrin repeat region circular profile. 263 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04414 Trre-Chr15 54811155 54815015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04414 1 588 Ion Channels AT2G26650 65.763 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04414 K21867 - gmx:100819491 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04414 15 54811155 54815015 Trre15g04414 15 54811155 54815015 ECH