Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04412 ATGTTAGGAGAAGTACAGCTTCAACCTCCACCTATGCAGCAAAACCCTAGTGATTCCGATCCTTTACTCGATCATCAAGATCATGTTGAAGAAGATCGAGACTCTCCTGGAACAACTTCTACTGAGATTAGGGATCAGGAAGATGTTGAAGCTGGATTACTCCCTTGTTGTCGAATTTGTCTCGAAACCGATTCTGATCCTGAGGATGATTTGATATCTCCATGCATGTGCAAAGGAACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTTTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAAACATTTGAGGATAACTCCTGGCGTAAAATAAAGTTCCGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTAATTGCTGCTATCGGTGGCTTTGCATACATCATGGACAAAGATGGGAATTTCAGGAACTCATTTGATGATGGGTGGGATAGGATACTGTCAAAGCATCCTATACCATTTTATTATTGTATTGGAGTGGTGGCCTTCTTTGTACTTATTGGATTTTTTGGCCTCATACTGCATTGCTCTTCCCTCAATAGCAATGACCCCAGAATGGCTGGATGTCAAAACTGTTGTTACGGATGGGGAATCTTGGACTGCTTTCCTGCATCAATGGAGGCGTGCTTCGCCCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTGTAGCTTATGGTTTTCTTGCAGCCACCATGGGAATTCAAAGAATTTGGCAGAGGCATTATCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTACAGGGCAGTTATTTCCCACCCAAGTTAGAACCTGAACATGAAAGTCGCTTGAAAATGCTTAAGCTTTTGTGA 939 0.4271 MLGEVQLQPPPMQQNPSDSDPLLDHQDHVEEDRDSPGTTSTEIRDQEDVEAGLLPCCRICLETDSDPEDDLISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVVAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGVAYGFLAATMGIQRIWQRHYHILTKRELTKEYIVEDLQGSYFPPKLEPEHESRLKMLKLL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04412 312 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 312 - -
Trre15g04412 312 SMART ringv_2 56 108 IPR011016 GO:0008270
Trre15g04412 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 121 IPR013083 -
Trre15g04412 312 ProSiteProfiles Zinc finger RING-CH-type profile. 49 114 IPR011016 GO:0008270
Trre15g04412 312 SUPERFAMILY RING/U-box 55 112 - -
Trre15g04412 312 Pfam RING-variant domain 57 107 IPR011016 GO:0008270
Trre15g04412 312 MobiDBLite consensus disorder prediction 1 45 - -
Trre15g04412 312 MobiDBLite consensus disorder prediction 21 45 - -
Trre15g04412 312 CDD RING_CH-C4HC3_MARCH 57 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04412 Trre-Chr15 54805788 54809281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04412 1 312 C3H Transcription Factor Family AT1G11020 78.816 1.41e-169 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04412 - - lang:109345289 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04412 15 54805788 54809281 Trre15g04412 15 54805788 54809281 ECH