Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04406 ATGACATTGGACGACGATAGTTCCATCTATGTTGGAGGTCTCCCCTACGATGCTTCCGAAGATACAATTCGCACTGTCTTCAATTTGTATGGTGCTATCCTTGATGTCAAGATTATCAATGACCAACGTACAATAGGAAAATGCTATTGTTTTGTTACTTTCACAAACCCTAGGTCAGCAATTGATGCTATCAACGACATGAATGGAAGAACTATTGGTGGACGTGTGGTTAAAGTTAATGGGGTGAAGAGTCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGGTGGTGGCAGATTGAATTTTGGGAGGGAAAGAGAACGTTATTATCATCATAATGATGAAAGAAATGGTGATTGGGATCGTGGAGGTAGAGATCGAGATATTCGAGACCAAGATTATGATCATGGTAATGTGAAAGATGGATACAGAAATAGAGGTAGTGATTGGACTCGGCTTCGTGATAGGTCTCGAGATCATGATAGGTCCCGAGATCATGACAGGGATAGGGATAGAAGAGTTGAGCATATGCAAGATTATGGTGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGGTCCCGGGACCGTGACAGGGATAGGGATAGAAGAGTTGAGCATATGCAAGATTATGGTGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGGTCTCGGGACCGTGACAGGGATAGAAGAATTGAGCATATGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGATCGTGATAGATCCCGAGACCGTGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGTCCGTGATAGATCCCGAGACCGTGATAAGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGATCCCGAGACCGTGATAGGGATAGAAGAGTTGAACACGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGCCCGTGATGGGGATAGAAGAGTCGAACATATGCAAGATTATGACGATCAAGCTAGAGAAAGCATGTTAGATGATGATTGGAATCGTGACGACGATAGGGTTGAATATGAACAAGGAAACAGTAGGATGCATGGTGGAGATGTGGATAAAGATCATACCTTAGATGTGGATACAGACAAAAACATGGATAGGATTAGTGATCCTATTCCTGATAAAAGTTTTGATGAACATAAAAAAGAACAGTCAAGGAGAAACATCGACTTGAATGTGACAAATCAAAACAGTCCTTCGGATTCTAATGGGGACCACAATGAGGAGCTAGAAGATGAATTTGAGAGGTCAATGCAGAGGCTTGATCAACTAAAAAAGGAGGTTTCTAAGATGGAAGAGGGATTGGAAGAGAGAAGAATTGATGTTATGGAATTACAAAAGCACTCTAAGAAACTGGAGGATGCTGTGATTAATGCAAAGAAACAATCTTTATATCGCCAGATGCAATTGACCAAGCTGCATGAATGTTTTCTACAAGTGCAAGAATCCACAGAAAGACTTAAATCTAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCAGTAATGTTTGAGAGTGATGGTGATGGCGATGGTGGTCTCGGACAACTTACAAACGGAAGTCTTGATGGTAGATAG 1674 0.414 MTLDDDSSIYVGGLPYDASEDTIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVKSRGGGGGGGGGVGGGRLNFGRERERYYHHNDERNGDWDRGGRDRDIRDQDYDHGNVKDGYRNRGSDWTRLRDRSRDHDRSRDHDRDRDRRVEHMQDYGDQARESMLDRDRSRDRDRDRDRRVEHMQDYGDQARESMLDRDRSRDRDRDRRIEHMQDYDDQARESMLDRDRSRDRDRDRRVEHVQDYDDQARESMLVRDRSRDRDKDRRVEHVQDYDDQARESMLDRDRSRDRDRDRRVEHVQDYDDQARESMLARDGDRRVEHMQDYDDQARESMLDDDWNRDDDRVEYEQGNSRMHGGDVDKDHTLDVDTDKNMDRISDPIPDKSFDEHKKEQSRRNIDLNVTNQNSPSDSNGDHNEELEDEFERSMQRLDQLKKEVSKMEEGLEERRIDVMELQKHSKKLEDAVINAKKQSLYRQMQLTKLHECFLQVQESTERLKSSEKEFQALVDSVMFESDGDGDGGLGQLTNGSLDGR 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04406 557 MobiDBLite consensus disorder prediction 114 421 - -
Trre15g04406 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Trre15g04406 557 Coils Coil 440 495 - -
Trre15g04406 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Trre15g04406 557 PANTHER GEO13361P1-RELATED 7 214 - -
Trre15g04406 557 SMART rrm1_1 8 80 IPR000504 GO:0003723
Trre15g04406 557 CDD RRM_SF 9 80 - -
Trre15g04406 557 MobiDBLite consensus disorder prediction 537 557 - -
Trre15g04406 557 Gene3D - 2 100 IPR012677 -
Trre15g04406 557 MobiDBLite consensus disorder prediction 422 436 - -
Trre15g04406 557 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676
Trre15g04406 557 MobiDBLite consensus disorder prediction 114 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04406 Trre-Chr15 54739600 54747637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04406 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 7.19e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04406 - - tpra:123921035 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04406 15 54739600 54747637 Trre15g04406 15 54739600 54747637 ECH