Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04405 ATGACATTGGACGACGATAGTTCCATCTATGTTGGAGGTCTCCCCTACGATGCTTCCGAAGATACAATTCGCACTGTCTTCAATTTGTATGGTGCTATCCTTGATGTCAAGATTATCAATGACCAACGTACAATAGGAAAATGCTATTGTTTTGTTACTTTCACAAACCCTAGGTCAGCAATTGATGCTATCAACGACATGAATGGAAGAACTATTGGTGGACGTGTGGTTAAAGTTAATGGGGTGAAGAGTCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGGTGGTGGCAGATTGAATTTTGGGAGGGAAAGAGAACGTTATTATCATCATAATGATGAAAGAAATGGTGATTGGGATCGTGGAGGTAGAGATCGAGATATTCGAGACCAAGATTATGATCATGGTAATGTGAAAGATGGATACAGAAATAGAGGTAGTGATTGGACTCGGCTTCGTGATAGGTCCCGGGACCGTGACAGGGATAGGGATAGAAGAGTTGAGCATATGCAAGATTATGATTATGACGATCAAGCTAGAGAAAGCATGTTAGATGATGATTGGAATCGTGACGACGATAGGGTTGAATATGAACAAGGAAACAGTAGGATGCATGGTGGAGATGTGGATAAAGATCATACCTTAGATGTGGATACAGACAAAAACATGGATAGGATTAGTGATCCTATTCCTGATAAAAGTTTTGATGAACATAAAAAAGAACAGTCAAGGAGAAACATCGACTTGAATGTGACAAATCAAAACAGTCCTTCGGATTCTAATGGGGACCACAATGAGGAGCTAGAAGATGAATTTGAGAGGTCAATGCAGAGGCTTGATCAACTAAAAAAGGAGGTTTCTAAGATGGAAGAGGGATTGGAAGAGAGAAGAATTGATGTTATGGAATTACAAAAGCACTCTAAGAAACTGGAGGATGCTGTGATTAATGCAAAGAAACAATCTTTATATCGCCAGATGCAATTGACCAAGCTGCATGAATGTTTTCTACAAGTGCAAGAATCCACAGAAAGACTTAAATCTAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCAGTAATGTTTGAGAGTGATGGTGATGGCGATGGTGGTCTCGGACAACTTACAAACGGAAGTCTTGATGGTAGATAG 1152 0.4054 MTLDDDSSIYVGGLPYDASEDTIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVKSRGGGGGGGGGVGGGRLNFGRERERYYHHNDERNGDWDRGGRDRDIRDQDYDHGNVKDGYRNRGSDWTRLRDRSRDRDRDRDRRVEHMQDYDYDDQARESMLDDDWNRDDDRVEYEQGNSRMHGGDVDKDHTLDVDTDKNMDRISDPIPDKSFDEHKKEQSRRNIDLNVTNQNSPSDSNGDHNEELEDEFERSMQRLDQLKKEVSKMEEGLEERRIDVMELQKHSKKLEDAVINAKKQSLYRQMQLTKLHECFLQVQESTERLKSSEKEFQALVDSVMFESDGDGDGGLGQLTNGSLDGR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04405 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Trre15g04405 383 MobiDBLite consensus disorder prediction 114 273 - -
Trre15g04405 383 SMART rrm1_1 8 80 IPR000504 GO:0003723
Trre15g04405 383 CDD RRM_SF 9 80 - -
Trre15g04405 383 Gene3D - 2 100 IPR012677 -
Trre15g04405 383 PANTHER GEO13361P1-RELATED 7 179 - -
Trre15g04405 383 MobiDBLite consensus disorder prediction 363 383 - -
Trre15g04405 383 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 214 - -
Trre15g04405 383 MobiDBLite consensus disorder prediction 248 262 - -
Trre15g04405 383 MobiDBLite consensus disorder prediction 114 247 - -
Trre15g04405 383 Coils Coil 266 321 - -
Trre15g04405 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Trre15g04405 383 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04405 Trre-Chr15 54739600 54747637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04405 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 2.81e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04405 - - psat:127073620 525.783