Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04404 ATGGCTTCACCATCTGAACTAGGCTTGGATTCCAAGCCACATAGCTACTCCATGTTACTCAAATCAGTTGGAGAACAAAGTGATCAAAGCTACAAACTTGAAGAATTTCTTTCTCGCTTAGAAGAAGAACGTCTCAAAATCGACGCTTTCAAGCGCGAACTTCCTCTCTGCATGCAACTTCTCACTAACGCTATGGAAGCATCAAAGCAACAACTTCAAGCTTTTAGAGTGAATCAAGGAAACACAACAAAGCCAATTCTAGAAGAGTTTATACCAGTGAAGCAATTAACTTCATTAGAAACTATGGAAAAAACAACAAATAATAATGTATGTGATAAGGCAAATTGGATGACAAGTGCACAACTATGGAGTCAAACAAGTGAAGGAACACAGCAACAAAATTCAACAAAAGAAATTACTGAAAATAATAATATAGGATTTAACATTAGTCCTAAACATAGAAATGGTGGAGCATTTTTACCATTTTCAAAAGAAAGAAATAATAACTCTGGTGTTCATCTTCCTGAACTAGCACTTGGTTCACCTCAGAAAGAGGTTGTTGATGATAGTAAGAAACATGTTGGAGAAGGAGAGAAGAGAGAAAACAATGAAGAAAAAGGGAGTCCAATAGCATCATCACATGCACAAACAACAAACAACAATAATTCAAATCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCTGATTTGCATAGAAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCAACACCAAAACAGATTAGGGAATTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTACACACAAGAAGACCAAGTCCAAGTTCCCAAACAGGTGCACCAGCAGCACAGTTAGTTGTTTTAGGAGGAATATGGGTCCCACCAGAATATGCTTCTGCAGCACATAATGGAGTAGGAACCCCTACTCTTTATGGTGCACATCCTACTTCTCATCATCTGACTCTGCCACACTATTGCACTGCTCCTGGTCAGGATCAGTATTATACTACCGCGCCGCCGACGCAGCAGCAGCTACTTCCGCCGCCTCATCACATGCACCATGTATACAAGACTACGCCGCATGGTCAGGGTTCGCCGGAGACGGGTGGAGATGGGTTGGAGAGTATCGAGAATGGGAAGTCGGAGAGTAGTAGCTGGAAAGATGGGAGTTCTGAGGAGAATGAAGGGGAGAGGAAAGGGTTTGTTGAAGAGAGTAATGCGAGTGACATCACTCTCAAATTTTAA 1293 0.4107 MASPSELGLDSKPHSYSMLLKSVGEQSDQSYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAFRVNQGNTTKPILEEFIPVKQLTSLETMEKTTNNNVCDKANWMTSAQLWSQTSEGTQQQNSTKEITENNNIGFNISPKHRNGGAFLPFSKERNNNSGVHLPELALGSPQKEVVDDSKKHVGEGEKRENNEEKGSPIASSHAQTTNNNNSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSSQTGAPAAQLVVLGGIWVPPEYASAAHNGVGTPTLYGAHPTSHHLTLPHYCTAPGQDQYYTTAPPTQQQLLPPPHHMHHVYKTTPHGQGSPETGGDGLESIENGKSESSSWKDGSSEENEGERKGFVEESNASDITLKF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04404 430 MobiDBLite consensus disorder prediction 402 420 - -
Trre15g04404 430 Coils Coil 33 53 - -
Trre15g04404 430 Pfam Myb-like DNA-binding domain 231 282 IPR001005 -
Trre15g04404 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 403 IPR044787 GO:0003700|GO:0006355
Trre15g04404 430 MobiDBLite consensus disorder prediction 352 430 - -
Trre15g04404 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 286 IPR017930 -
Trre15g04404 430 MobiDBLite consensus disorder prediction 124 233 - -
Trre15g04404 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 229 284 IPR006447 GO:0003677
Trre15g04404 430 MobiDBLite consensus disorder prediction 208 229 - -
Trre15g04404 430 MobiDBLite consensus disorder prediction 185 207 - -
Trre15g04404 430 MobiDBLite consensus disorder prediction 124 150 - -
Trre15g04404 430 FunFam Myb family transcription factor 228 286 - -
Trre15g04404 430 SUPERFAMILY Homeodomain-like 226 287 IPR009057 -
Trre15g04404 430 Gene3D - 228 286 - -
Trre15g04404 430 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04404 Trre-Chr15 54733504 54735537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04404 1 430 G2-like Transcription Factor Family AT2G03500 50.323 2.29e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre15g04404 Myb_DNA-binding 9.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04404 - - tpra:123921036 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04404 15 54733504 54735537 Trre15g04404 15 54733504 54735537 ECH