Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04403 ATGTCTTCATTTATTTTCATTTTTCTTTTTTTATTTTCACTGAGTTTTCATATTAACTCGGAACCAACTCAGGATAAGCAAGCTCTCCTTGCTTTTATTTCACAAACACCACACTCTAACCGTCTTCAATGGAATTCTTCCGATTCCGTTTGTAACTGGGTTGGTATTCAATGTGACGCTACTAAATCATATGTTTATTCTCTCCGTTTACCTGCCGTTGATCTTGTCGGTAAAATTCCACCCAACACAATCGGACGGTTAACAAATCTCCGTGTTCTTAGTCTCCGTTCTAATGCTCTTTCCGGTCAGATCCCTTCTGATTTTTCTAATTTGACTTTTCTTCGTAGTATTTATCTACAGAGAAATAAATTCTCCGGTGAGTTTCCATCTAGTTTAACTCGCTTGACTCGTTTGACTCGTTTGGATCTCTCTTCTAATAACTTCACCGGTTCAATTCCTTTCTCTATCAACAATTTGACTCATCTTACTGGTTTGTTCTTAGAGAACAACACGTTCTCCGGTTCTCTTCCGAGTATCACTGCAAATTTGAACGGTTTCGATGTTTCTAACAACAATCTCAACGGTTCAATTCCCAAAACGCTCACTAAATTCCCTGAATCGTCGTTCGCCGGAAACTTAGATCTCTGTGGTCCACCGTTGAAATCATGCACACCGTTTTTTCCGGCGCCGGCGCCATCACCGGATTCAATTCCACCTGCTGATGATAAACCAAAGCACAAATCAAAAAAACTTTCCACCGGCGCCATTGTCGCAATTGTAGTCGGTTCTATTCTATTCATAGCTTTATTGCTTCTACTACTGTTACTCTGTCTCCGGAAACGCCGTCGCCGGACACCAGCAAAACCACCAAAGCCAGTAGTTACTGCAGCAGCTCGTTCTGTTCCGGGAGAAGGCGGAACATCGTCTTCGAAAGACGATATAACCGGCGGTTCAGCCGAAGCAGAGAGGGAGAGGAACAAACTGGTGTTCTTTGACGGAGGAATATACAGTTTCGATTTGGAGGATTTGCTTAGAGCTTCTGCGGAGGTTTTGGGTAAAGGAAGCGTTGGAACTTCGTATAAAGCGGTGTTGGAAGAAGGAACTACGGTGGTTGTTAAAAGATTGAAAGATGTTGTTGTAACTAAGAAAGAATTTGAAATGCAAATGGAAATTTTGGGTAAAATTAAGCATGAAAATGTTGTTCCTCTTAGAGCTTTTTACTTCTCTAAAGATGAGAAATTGCTTGTTTATGATTACATGCCAGCTGGTAGCTTATCTGCGTTGCTTCACGGGAGCAGAGGATCTGGACGAACCCCGTTAGATTGGGACAACCGGATGAGAATAGCCCTTGGAGCTTCGAGAGGACTAGCATGCCTCCATGTGTCAGGCAAAGTAATCCATGGCAACATCAAATCCTCCAACATCCTCCTTAAAGGACCTGACCACGATGCAAGCGTTTCCGACTTTGGTCTCAACCCATTATTCGGAAACGGATCCCCATCAAACCGTGTTGCAGGTTACCGTGCACCAGAAACCCTAGAAACCCGAAAAGTCACATTCAAGTCTGACGTGTATAGCTTTGGAGTCTTGTTGTTGGAGCTATTAACAGGAAAAGCACCCAATCAAGCTTCACTTGGAGAAGAAGGAATCGATCTCCCAAGGTGGGTCCAATCTGTTGTTCGTGAAGAATGGACCGCAGAAGTTTTTGACGCGGAGTTGATGAGGTTTCATAACATTGAAGAAGAAATGGTTCAATTGTTACAGATTGCGATGGCTTGTGTTTCTGTGGTGCCTGATCAAAGACCAAGTATGCAAGATGTGGTACGCATGATTGAAGATATGCACCGCAGCGAAACTGATGAAGGTCTCCGACAGTCGTCCGACGATCCTTCAAAAGGATCTGAGGGTCATACTCCACCTCCCGAATCAAGGACTCCACCTAGATCACACACACCATAG 1959 0.4359 MSSFIFIFLFLFSLSFHINSEPTQDKQALLAFISQTPHSNRLQWNSSDSVCNWVGIQCDATKSYVYSLRLPAVDLVGKIPPNTIGRLTNLRVLSLRSNALSGQIPSDFSNLTFLRSIYLQRNKFSGEFPSSLTRLTRLTRLDLSSNNFTGSIPFSINNLTHLTGLFLENNTFSGSLPSITANLNGFDVSNNNLNGSIPKTLTKFPESSFAGNLDLCGPPLKSCTPFFPAPAPSPDSIPPADDKPKHKSKKLSTGAIVAIVVGSILFIALLLLLLLLCLRKRRRRTPAKPPKPVVTAAARSVPGEGGTSSSKDDITGGSAEAERERNKLVFFDGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYMPAGSLSALLHGSRGSGRTPLDWDNRMRIALGASRGLACLHVSGKVIHGNIKSSNILLKGPDHDASVSDFGLNPLFGNGSPSNRVAGYRAPETLETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPSMQDVVRMIEDMHRSETDEGLRQSSDDPSKGSEGHTPPPESRTPPRSHTP 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04403 652 MobiDBLite consensus disorder prediction 613 652 - -
Trre15g04403 652 Gene3D Phosphorylase Kinase; domain 1 314 419 - -
Trre15g04403 652 ProSiteProfiles Protein kinase domain profile. 345 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04403 652 FunFam pollen receptor-like kinase 1 315 419 - -
Trre15g04403 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 625 - -
Trre15g04403 652 Pfam Protein kinase domain 348 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04403 652 PANTHER OS05G0588300 PROTEIN 5 624 - -
Trre15g04403 652 SUPERFAMILY L domain-like 24 207 - -
Trre15g04403 652 MobiDBLite consensus disorder prediction 227 246 - -
Trre15g04403 652 MobiDBLite consensus disorder prediction 285 320 - -
Trre15g04403 652 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Trre15g04403 652 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Trre15g04403 652 CDD STKc_IRAK 351 614 - -
Trre15g04403 652 MobiDBLite consensus disorder prediction 613 631 - -
Trre15g04403 652 SUPERFAMILY Protein kinase-like (PK-like) 349 616 IPR011009 -
Trre15g04403 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Trre15g04403 652 Gene3D Ribonuclease Inhibitor 182 226 IPR032675 -
Trre15g04403 652 Pfam Leucine rich repeat 72 124 IPR001611 GO:0005515
Trre15g04403 652 FunFam Probable inactive receptor kinase RLK902 22 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04403 Trre-Chr15 54700531 54703809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04403 1 632 Receptor kinase-like Gene Family AT5G58300 53.727 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre15g04403 Pkinase 4.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04403 - - gmx:100806857 971.074