Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04401 ATGTCTCATTTCAACTCTGATCAAACTCATAAAATGTTAGACGCTTATATCTATGATTACCTGATGAAGCGAGAGTTCTATGAAACCGCGAAAGCATTTCATGATGAAGCCGCGGTGGAAACCGATATTGTTATCGATGCACCTGGCGGCTTTCTCTACGATTGGTGGACTGTTTTCTGGGAATTGTTTATGGCCAAACAAGGTCTTTCAAACTCAGAACCAGCTTTATCTTACCATCAGTTCCAAAAAAATAAGGCTCAAGAAATGCGGAAGCAAGAAGAGCTGGAGAGTATCCAGTTTGCATCACAGAGCCCTGCTCAGCAGCAGCAATATGGGGCTGAAACTCAAGTTCTTAATGGCAATGTTCTCTGTCCCATAAACTATAGTCCTTTGGCGAGGCAGAACCGGGTAGCTTCTAATACAATGGCACCGCAACTAAATGAGGACAGGTTGAAGTCTCCCCTCCATGGAAATGATTTTGGGAACATGCTCATTGAGATAATGGAATCTTATGCCCACCGCGGGCATCCAATCGAGGATAGTGCTTTTCTGTGGAACGCAACAACAGCATTAACCGGTGGACAGGCTTCAGGACAAACATTTCCCAGTGCACCTAGCATTTTACAAGGGAATCTTCAACAAGTTCAAACTCCGAACCGGCTACTTCTAGGGTCTACACAATACATGAACAGTGATATGAGTGCAATGATGAGGTCTCGAGCTGTTGTTTCAGAAGGATCCTTAATCGGTGTTCATGGTTCAAATCAAGGTGGTAGCGATCTGACTCTGAAAGGGCGGCCTATAGAAGGACTGGAACAGCTTAATGCAGAAATTCTCCAGAAGCATAATTTGAGAATGTCTTCTCAATATTCCAATCAATTTTCACAAAGGCAGCAACTTATGCTTCAGGCACAGCAGAATTTATTCAATCCATCTGTCAGTAGTTTTGATAGCAAAAGACCAAGGGTGCTTCTTGGGAGAGGTGGCCCGTCAAATTCAGTTGGCGGTTCTGTTCCCAATATTGGAACACCTCAAATGGATTCCCCTGAATTGTATATGCTCCTTAAGGATACCAAAAGTGGAGTCGGGCGAAAGCAAAAACGAAAAGTAGGATCATATTCAGGTCCTGGCAGCAGCTCTGGAACTGCAAACACAGTGGGGCCATCTTCTGGTTCACCTTCTACACCATCCATGCAGACACCGCTGCCAACTCCGAAACAGAATGATTTGGGATCACTTGCATCAACACAGAATCAATTGGCTGATATGGACCATCTCAAGAGTGATGGATCTTTGGGTGAAAATTTTGAGTCATTCTCATCTCTTGCTGATACAGTCCATAAAGGACGAGTTGGAATAGGATTCTCATTGAAGGAGATCAAACATGGAATTGCTAGTTCACATAAAGTTGACTGTTGTCACTTCTCCTCTGATGGAAAACTGCTTGTTACTGGTGGTCATGACAAAAAGGCTTCTCTTTGGTGCACAAAATCGTTTAACCTGCAATCTACTCTTGAAGAGCACACTCAATGGATAACTGATGCTAGATTTTGTCCAAGCATGTTCTGTGTTGCTACGTCCTCTGCCGATAAAACTGTGAAGGTTTGGGATGTCAATGATCCAGGTCATTCTCTTCGGACATTTACAGGGAGTACAGCTGTGATGTCAATAGACTTTCACCCAAGTAAAGATGACCTTATCTGCTCTTGTGATAATAAAGAGATAAGATATTGGAGTATTGGAAAGGGTAGTTTAGTTGGGGTTTACAAGGGTGCTGTAACTCGGGTGAGATTTCAACCTGGTTTGGGAAAGCTTCTTGCAGCTGCAGTAAATAATCTAATACTCATCCTTGACGCAGAAACTCTGCGTTGCAAATTTAAACTGGAGGGTCACAAGAGCCTTGTTCATTCACTGTGCTGGCACTCTTCTGGAGATTATCTTGCATCTGTCAGCGATGATCAGGTTAAAATCTGGGCTATTGGATCTGACAGCTGCGGGGTATGTATTCAGCAATTGAATTCACATGGGACCAATGACAAATTCAAGACCTGTGTTTTCCATCCCATCTGTCATGTTTTAATCATTGGCTACAATGAGTCGCTTATGCTGTGGAACTTCGTTGAAAGACAAAAAATGACCATGCCTGCACATGACAATCTGGTATCAGCCTTGGCAGTCTCTGATGTTACCGGGTTGGTGGCTTCAGTCAGCCATGACAAGCACTTTAAATTCTGGAAGTGA 2241 0.4342 MSHFNSDQTHKMLDAYIYDYLMKREFYETAKAFHDEAAVETDIVIDAPGGFLYDWWTVFWELFMAKQGLSNSEPALSYHQFQKNKAQEMRKQEELESIQFASQSPAQQQQYGAETQVLNGNVLCPINYSPLARQNRVASNTMAPQLNEDRLKSPLHGNDFGNMLIEIMESYAHRGHPIEDSAFLWNATTALTGGQASGQTFPSAPSILQGNLQQVQTPNRLLLGSTQYMNSDMSAMMRSRAVVSEGSLIGVHGSNQGGSDLTLKGRPIEGLEQLNAEILQKHNLRMSSQYSNQFSQRQQLMLQAQQNLFNPSVSSFDSKRPRVLLGRGGPSNSVGGSVPNIGTPQMDSPELYMLLKDTKSGVGRKQKRKVGSYSGPGSSSGTANTVGPSSGSPSTPSMQTPLPTPKQNDLGSLASTQNQLADMDHLKSDGSLGENFESFSSLADTVHKGRVGIGFSLKEIKHGIASSHKVDCCHFSSDGKLLVTGGHDKKASLWCTKSFNLQSTLEEHTQWITDARFCPSMFCVATSSADKTVKVWDVNDPGHSLRTFTGSTAVMSIDFHPSKDDLICSCDNKEIRYWSIGKGSLVGVYKGAVTRVRFQPGLGKLLAAAVNNLILILDAETLRCKFKLEGHKSLVHSLCWHSSGDYLASVSDDQVKIWAIGSDSCGVCIQQLNSHGTNDKFKTCVFHPICHVLIIGYNESLMLWNFVERQKMTMPAHDNLVSALAVSDVTGLVASVSHDKHFKFWK 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04401 746 Gene3D - 578 746 IPR015943 GO:0005515
Trre15g04401 746 Gene3D - 456 577 IPR015943 GO:0005515
Trre15g04401 746 Pfam WD domain, G-beta repeat 544 579 IPR001680 GO:0005515
Trre15g04401 746 Pfam WD domain, G-beta repeat 467 494 IPR001680 GO:0005515
Trre15g04401 746 Pfam WD domain, G-beta repeat 623 658 IPR001680 GO:0005515
Trre15g04401 746 Pfam WD domain, G-beta repeat 500 537 IPR001680 GO:0005515
Trre15g04401 746 MobiDBLite consensus disorder prediction 359 412 - -
Trre15g04401 746 ProSiteProfiles Trp-Asp (WD) repeats profile. 714 746 IPR001680 GO:0005515
Trre15g04401 746 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 714 746 - -
Trre15g04401 746 Pfam LisH 11 37 IPR006594 GO:0005515
Trre15g04401 746 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Trre15g04401 746 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 539 IPR001680 GO:0005515
Trre15g04401 746 MobiDBLite consensus disorder prediction 372 412 - -
Trre15g04401 746 ProSiteProfiles Trp-Asp (WD) repeats profile. 628 658 IPR001680 GO:0005515
Trre15g04401 746 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Trre15g04401 746 SMART WD40_4 621 659 IPR001680 GO:0005515
Trre15g04401 746 SMART WD40_4 498 537 IPR001680 GO:0005515
Trre15g04401 746 SMART WD40_4 665 705 IPR001680 GO:0005515
Trre15g04401 746 SMART WD40_4 707 746 IPR001680 GO:0005515
Trre15g04401 746 SMART WD40_4 541 579 IPR001680 GO:0005515
Trre15g04401 746 SMART WD40_4 582 618 IPR001680 GO:0005515
Trre15g04401 746 SMART WD40_4 456 495 IPR001680 GO:0005515
Trre15g04401 746 MobiDBLite consensus disorder prediction 312 347 - -
Trre15g04401 746 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 539 - -
Trre15g04401 746 SUPERFAMILY WD40 repeat-like 456 746 IPR036322 GO:0005515
Trre15g04401 746 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 746 IPR044716 GO:0003714
Trre15g04401 746 CDD WD40 467 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04401 Trre-Chr15 54678210 54685351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04401 566 745 Miscellaneous Gene Families AT5G08390 24.731 3.68e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre15g04401 WD40 0.00029 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04401 - - mtr:11440246 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04401 15 54678210 54685351 Trre15g04401 15 54678210 54685351 ECH