Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04394 ATGTCTGGAAAGTTTGATTTTTTGGCTGATGCTGTTCCTGGGAGGATTTCTTGGCGATTCAAGGTTCGGATTGCTCGTCTCTGGGAGGTTTCTGCTCATCTTAGGCCTGATGTGGTTAACTCCCTTGAAATGGTGCTTGTTGATTCTAAGAGATTTAGGATTCATGCTACAGTCCGGAAGCAGTTGGTTTATCTGTTTCAGCGGAAGCTTGAGGAATGGCTTGTTTACGCGTTGAAGATTGAGCTGGCTTTGTTCGGTGATTATGTTCCCCAGTTTCAGAAAATGATGGCGGATGCCTCTGGTGCCATGCCTATTTGTATTGTTCAGTATGCTAAGGTTAAGCTGTTTAGAGATCAAGTGTCCATTCAGAATGTTATCAATGCAACCAGGATAATGATGGATCCTGATGTTGCTGAGGTTGTTGCATTTAGGGATGGTCTTGCTGTGCATGGTATTGAAGCTGGTGGTAGTGTTGTTGCCCTTTGGCCTCGTATTAGGGTTTCAATGGAGGAGGATTTTCTGCATTCTTATCCTCCAATGGTAATCTCTAATTTGAACTCTGTGGTTGACAATAGTACTTTTATTGTTTGTGCCACTATTATCGGTGTTGTTTCTGGTGAGGATTGGTGGTACCCTGCTTGTAAGTGTCACAAGAGTGTCACTGCAGACTCTGGCTCATACTATTGCGAGCGGTGTGTGAAGCATGTGTTTCAGATGATACCTAGGTTTAGGGTTAAGTTTCTTGTTACTGATGGAACCGGTGATGCTGTTTTTGTGCTGTTTGATGCTGACGTCCAGCATTTGCTTGGTCAGCGTTGTTCTTCTTTGGTTGCTACTGCTGGTGTTGAGCGTGGTGGGAACTACCCTCCTGAAATTCTTGCTCTGGAGGGTACCAAAGTTTTGTTCAAGGTTTCCAGAGTTGCTTCTCCTCTCCTTTTAAGTGATTGCACCTTTAGGGTTAAGCGTGTTTGCACTGATCCTGCGATCCTCAAGGCCTACGGTGTCTCTGCTGTTGATTCGGTTGTGTCCCAGGCTGTGGATAAGCCTGGGCTCCTTGGTGGGGAGAGCCTCTCTGAAGGTATTCCTTCTCTTAGTGAGGCTGGAGTCGACGATTTTGTATCTTCTTTGCTTGTTTCTCCTGCCCGGTCTTCTGCTCAACAGTCTGGTTTTAGTGGCCCTTTGTCTGATGAAAATACACCTGAACGCTCTACTGGTGCATCTGTTGTTCGTCTCGATGATGATGCTATTGGTGATACTACTTCTATCTCTGTCTTGTATCCTAATTTGGCTTCTGGATCTCCTGGTTGTGAAAAGCGGAGTCTTTCTTCTGCTTTTGATGGTGACGGTTGTGTTAAGGTTGTTTCCCCCTGTAAGGCTTCAAAGTCGGATGGTGTTAGCGATATTGAAGCTATAACTAATGCATGGGCTAGCAGCGTGGATAGTGATTCTGATGTTGATGTTGTACCCCCAACTGTTTCATCTGGTGTGGGTGCTGTTGTTGATGATGGTGTTGAGCCTCCTGTTATTTCTTCCGAGTTGGATGGTGTTAATTATGTTGAGGTTGTTGTTACTGCTGAGACTGCAAAGATGGATTGA 1596 0.4518 MSGKFDFLADAVPGRISWRFKVRIARLWEVSAHLRPDVVNSLEMVLVDSKRFRIHATVRKQLVYLFQRKLEEWLVYALKIELALFGDYVPQFQKMMADASGAMPICIVQYAKVKLFRDQVSIQNVINATRIMMDPDVAEVVAFRDGLAVHGIEAGGSVVALWPRIRVSMEEDFLHSYPPMVISNLNSVVDNSTFIVCATIIGVVSGEDWWYPACKCHKSVTADSGSYYCERCVKHVFQMIPRFRVKFLVTDGTGDAVFVLFDADVQHLLGQRCSSLVATAGVERGGNYPPEILALEGTKVLFKVSRVASPLLLSDCTFRVKRVCTDPAILKAYGVSAVDSVVSQAVDKPGLLGGESLSEGIPSLSEAGVDDFVSSLLVSPARSSAQQSGFSGPLSDENTPERSTGASVVRLDDDAIGDTTSISVLYPNLASGSPGCEKRSLSSAFDGDGCVKVVSPCKASKSDGVSDIEAITNAWASSVDSDSDVDVVPPTVSSGVGAVVDDGVEPPVISSELDGVNYVEVVVTAETAKMD 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04394 531 SUPERFAMILY Nucleic acid-binding proteins 190 304 IPR012340 -
Trre15g04394 531 MobiDBLite consensus disorder prediction 384 406 - -
Trre15g04394 531 CDD RPA1_DBD_C 194 305 IPR047192 -
Trre15g04394 531 Pfam Replication factor-A C terminal domain 195 279 IPR013955 -
Trre15g04394 531 Gene3D - 180 320 IPR012340 -
Trre15g04394 531 PANTHER OS03G0429900 PROTEIN 10 306 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g04394 531 MobiDBLite consensus disorder prediction 384 405 - -
Trre15g04394 531 Gene3D - 43 152 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04394 Trre-Chr15 54568512 54571191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04394 82 270 Core DNA Replication Machinery Family AT5G08020 24.000 1.51e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04394 - - tpra:123889473 287.345