Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04387 ATGTCATCATCAAGTGGAACAATTTGGAGCTATGAAGAAGAAAAATCATTTGAGAATGCAATAGCCATGCATTGGAATGAAAAAGAAGAAGAAAATTCAAATGAACAATGGGAAAAGATTGCTTCATGTGTCCCTAACAAAAGCATGGAAGAAGTGAAACAACATTACCAATTATTGGTAGATGATGTTAGTGCAATTGAGGCAGGTCATGTATCATTTCCAAATTATGCTAATGAATTAGAAACTACTACTAATTCTTCAAATAAAGATTCTTCCAAGTCCTCCACAAGTTCAGATAAGAGATCATCAAGTTGTAATTTTGGAAGTGGGTTTTCTGGATTAGGACATGACTCTAATCACCATAGTAGTGGTAAAGGTGGATTGTCGAGGTCATCATCGGAACAAGAAAGAAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGCTATTTTTACTTGGTCTAGACAAATTTGGAAAAGGAGATTGGAGGAGTATATCAAGGAACTTTGTGATATCAAGGACACCAACACAAGTAGCAAGTCATGCACAAAAGTATTTCATAAGATTGAATTCAATGAATAGAGATAGAAGAAGGTCTAGTATTCATGATATCACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACAGGTCAACATGGTAACACAATTCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCAACCTCATCATCATCATCATCCTGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGACATCTGCAGTTGGAACTCCTGTTATGCTTCCTCATCATCCACCTTATGTTGTACCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATAA 915 0.3727 MSSSSGTIWSYEEEKSFENAIAMHWNEKEEENSNEQWEKIASCVPNKSMEEVKQHYQLLVDDVSAIEAGHVSFPNYANELETTTNSSNKDSSKSSTSSDKRSSSCNFGSGFSGLGHDSNHHSSGKGGLSRSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVQPHHHHHPGGLGMYGAPVGHPVVAPPAHMTSAVGTPVMLPHHPPYVVPLAYPMAPPTMHQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04387 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 139 189 IPR006447 GO:0003677
Trre15g04387 304 ProSiteProfiles SANT domain profile. 143 191 IPR017884 -
Trre15g04387 304 SMART sant 139 189 IPR001005 -
Trre15g04387 304 SMART sant 5 62 IPR001005 -
Trre15g04387 304 Pfam Myb-like DNA-binding domain 9 58 IPR001005 -
Trre15g04387 304 Pfam Myb-like DNA-binding domain 142 187 IPR001005 -
Trre15g04387 304 CDD SANT 9 60 IPR001005 -
Trre15g04387 304 CDD SANT 142 187 IPR001005 -
Trre15g04387 304 FunFam Transcription factor SRM1 1 73 - -
Trre15g04387 304 SUPERFAMILY Homeodomain-like 7 64 IPR009057 -
Trre15g04387 304 FunFam transcription factor MYB1R1 141 192 - -
Trre15g04387 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
Trre15g04387 304 MobiDBLite consensus disorder prediction 81 141 - -
Trre15g04387 304 Gene3D - 1 73 - -
Trre15g04387 304 PANTHER TRANSCRIPTION FACTOR KUA1 5 292 - -
Trre15g04387 304 SUPERFAMILY Homeodomain-like 137 192 IPR009057 -
Trre15g04387 304 Gene3D - 141 193 - -
Trre15g04387 304 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Trre15g04387 304 MobiDBLite consensus disorder prediction 81 130 - -
Trre15g04387 304 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04387 Trre-Chr15 54534685 54535759 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g04387 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04387 - - gmx:778049 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04387 15 54534685 54535759 Trre15g04387 15 54534685 54535759 ECH