Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04385 ATGAGTTGGAGTAGGGTTTTGAAATCTGCTCAGGCACTTGCTGCTCATACTTTTCTATTGTGTTTCACTCTTTTGCTCCTTCTCAAGCTTGATCATCAAATTTCTTCATCTTGGTGGATAATATTTTTACCTCTTTGGATGTTCCATGGCGTTGTGGCTCGAGGGAGGTTTTCATTACCTGCACCATCAGCTCCACGTAATCGACATTGGGCGCCGTGTCACACCGTTGTTGCAATGCCATTGCTCATTGCGTTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGTTCGTGGCTTTCCAGCAGTAGATCTGAAGATTGTGTTCCTCCCTTTACTTACATTTGAAGTCATTATTCTCATTGATAATTTTAGAATGTGTAAAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATCTCCATGGTGTTCTTCGTAGCTGCTACAGTCTTCACACTCCTAAAACTAAGTGGTAGTGTAGCTTCTCTCGGTTGGTGGGACTTATTTATTAACTTCACTATTGCCGAGTGCTTTGCGTTTCTTGTATGCACAAAGTGGTCGAATCCTGTCATTCATAGAAGTTCCAGAGAACCGAGTTCTTCTTCTTCTACTACAATTAGATATCTTGACTGGAACGGTGGTTTACTGGTTTCTTCAGAAGAAGATCAACATCAGGCGAGAATCTGTAGCCTGCAAGACATAGGGGGCCATTTCATCAAAGTACCTATTATTGTCTTCCAGGTTCTTCTTTGCATGCATTTAGAGGGAACGCCTGCTTTTGCTGCACAATTACCTCTTGCAATTCTTTTTTCTCCGCTTTTCGTACTGCAAGGTGTTGGCGTGATATTATCTGCATCTAAATTTGTGGAGAAACTTGTGCTTCTTCTACGAAGTGGAGCTGGCGGGGGACTTTATTTTAGAGTCTCTTCCAGAACTCATGATTGCTTGGGATTTTTGCACCATGGTTCTAGATTATTAGGCTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAGGCACGGTTGTACCATGAGGGAGCATCTGGGTATAATACGTTCAGCGGTTACCCTCCTGAGATTGTTAAAAAAATGCCTAAAAGGGATCTTGCTGAGGAGGTGTGGAGACTCCAGGCAGCTCTTGGCGAGCAGACGGAAATTACAAAATACAGTCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGCTTTGCCGAATTTGTTTTGAAGGAGAGATTAGCGTCGTTTTACTCCCATGTAGGCATCGCGTCCTTTGCAGCTTATGCTCAGAGAAGTGTAAGACATGCCCAATTTGCCGCAACTATATCGCAGAGCGCTTGCCCGTATATGATGTCTAA 1401 0.4304 MSWSRVLKSAQALAAHTFLLCFTLLLLLKLDHQISSSWWIIFLPLWMFHGVVARGRFSLPAPSAPRNRHWAPCHTVVAMPLLIAFELLLCIYLESLYVRGFPAVDLKIVFLPLLTFEVIILIDNFRMCKALMPGDEESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGSVASLGWWDLFINFTIAECFAFLVCTKWSNPVIHRSSREPSSSSSTTIRYLDWNGGLLVSSEEDQHQARICSLQDIGGHFIKVPIIVFQVLLCMHLEGTPAFAAQLPLAILFSPLFVLQGVGVILSASKFVEKLVLLLRSGAGGGLYFRVSSRTHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCSLCSEKCKTCPICRNYIAERLPVYDV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04385 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 464 IPR013083 -
Trre15g04385 466 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Trre15g04385 466 SUPERFAMILY RING/U-box 411 461 - -
Trre15g04385 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 466 - -
Trre15g04385 466 FunFam Kinesin-like protein KIN-7D, mitochondrial 396 464 - -
Trre15g04385 466 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
Trre15g04385 466 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
Trre15g04385 466 SMART ring_2 419 453 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04385 Trre-Chr15 54505912 54511356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04385 1 466 C3H Transcription Factor Family AT1G73950 71.888 0.0 680
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04385 15 54505912 54511356 Trre15g04385 15 54505912 54511356 ECH