Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04381 ATGTATTCATCAAATAGTTCCCTCAATGGAAATAACCTAACATTTTCATCTTCTAAATCACTTTTTTGTAATTCCTTTGAAAGCAACTCAACTTCATCAAAAGATCAACAAAACAACATTCATTCACTTTTTCCTCTTCCTCCTTTCCCTTTCTTTCAATTCCCTAATTATCCTGATGATGTTGTTGATGATCCCTTTCAAGACAATCAACAAATGTTTCTCCAACAACATCATGATGATGGTGATTTCCAACTTCATCATTCACCACATGTTGTGAGTACTGATCATAATCATAATCATAATCATAATCAGCAGCGGCCTTCAAATTCATCGATAATCAACAACGCTAACAACGATATTGTTAATAATGTTGTTTCTGAAGCAGGTGGTACTAAAGGAAAAACAATAGTGAATCATCAGGTGAAGCAGATCCAACAAAGAAAAAGATCTAGCAAGCGAGATCGGCATAGTAAGATAAAAACCGCGAAAGGACTAAGAGATCGGAGAATGAGACTTTCTCTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGATTTGAAAAAGCAAGCAAAACAGTTGATTGGTTACTCAACCAATCAAAACTTGAAATCAAACATCTTGCAAGAGAAAAGAATCTTCATTTTCCTACTAAAAGTTCATCTTCAACTTCTGAATGTACTGAAGGAGTTTCAAGCTTGGATAATGAAGTTGAAAATCTAGAAGAGGAAGAGCCACAACAAAAACAAGAAAAAGTGATTATGATGAAAAGAACAAGAAATAGAACTAATAAGGTTTGTAGAAAGAGTGCATTCAATTCTATTAGTAGAGAAAAAGCAAGAGAAAGGGCAAGAGAAAGAACTAAAGAAAAATTAATGAAAGCTAGAACATCAATAGTACTAGTTGATGAATCAAGTTCAAAACAATGTAATGATGAAGGAAAAGGAACAAAAACTAACCTCATTTGGAACCCTTTTGAAAGTGTTGAAGAATCTGGAGGATGTACACATCAAAGACAAAGTGTGAATCATTCTTCTTTTGATCATGTGAAGCTGATTATTGAAGGTGAAGTTGAAAGAAACTCTCAAAAAGCAAAGGAACAAGATTCAGAAGAAGATGATTCTTTGTTCATTATGAGTAAATGGAGTCCACCTATGATTTTCAATTCTCTCAATAACCTTCAACAACATCAATTTGAACAATTTCATCAATCCATGGAAAAACAATGTTGGGAAGGCTACAACAACCGCATCTAA 1263 0.3357 MYSSNSSLNGNNLTFSSSKSLFCNSFESNSTSSKDQQNNIHSLFPLPPFPFFQFPNYPDDVVDDPFQDNQQMFLQQHHDDGDFQLHHSPHVVSTDHNHNHNHNQQRPSNSSIINNANNDIVNNVVSEAGGTKGKTIVNHQVKQIQQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKHLAREKNLHFPTKSSSSTSECTEGVSSLDNEVENLEEEEPQQKQEKVIMMKRTRNRTNKVCRKSAFNSISREKARERARERTKEKLMKARTSIVLVDESSSKQCNDEGKGTKTNLIWNPFESVEESGGCTHQRQSVNHSSFDHVKLIIEGEVERNSQKAKEQDSEEDDSLFIMSKWSPPMIFNSLNNLQQHQFEQFHQSMEKQCWEGYNNRI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04381 420 ProSiteProfiles TCP domain profile. 152 210 IPR017887 -
Trre15g04381 420 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 106 387 IPR005333 GO:0003700
Trre15g04381 420 MobiDBLite consensus disorder prediction 141 163 - -
Trre15g04381 420 ProSiteProfiles R domain profile. 276 293 IPR017888 -
Trre15g04381 420 MobiDBLite consensus disorder prediction 92 115 - -
Trre15g04381 420 MobiDBLite consensus disorder prediction 218 237 - -
Trre15g04381 420 MobiDBLite consensus disorder prediction 145 163 - -
Trre15g04381 420 Coils Coil 226 253 - -
Trre15g04381 420 Pfam TCP family transcription factor 151 295 IPR017887 -
Trre15g04381 420 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04381 Trre-Chr15 54456676 54458134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04381 13 408 TCP Transcription Factor Family AT3G18550 31.106 3.07e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre15g04381 TCP 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04381 - - tpra:123923172 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04381 15 54456676 54458134 Trre15g04381 15 54456676 54458134 ECH