Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04364 ATGGCAGAACCAGAAAACAACCTCCAAGTTTCTTCATCTATGAATGAAACCAATAACAAGCATAAACAGAAGAAGAAGCACGACAAAAAGAGACCTCGAGATATTGTTGAGGAAGAAGAAGAGAATGTGAATAATACTCATAGCAATGGAGAATCTTCGAAAAAGAAGAAGAATAAGAAGAACAAAGAGGAGGAGAATGAAGTGGAAGTAGAAAATGAATTGGAAGAGAAAAAAGTGAAGAACAATAGTGGTTCTGGAATTATGAGCAATGAATCATTTGCTTCTCTGGAATTGTCTAATTCTACTTCTAAAGCCATTATGGATATGGGATTCCAAAACATGACTCAGATTCAAGCAAGAGCAATTCCACCACTTTTGAATGGAAAAAATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAATTCCTGCTGTGGAGCTTTTGCACAAGCTTAAATTTAATCCTCGAGATGGAGCTGGTGTTGTTGTCATATGCCCCACTAGAGAGCTTGCTATTCAGACGCACGATGTTGCCAAGGAGCTTCTAAAGTATCATTCGCAAACTCTTGGATTGCTTATTGGTGGTTCATCGAGAAAAACTGAAGCTCAACACCTTGCTAAAGGAATAAATATAGTGGTAGCTACCCCTGGTCGTCTTTTGGATCATCTACAAAATACCAAGAGATTCATTCATAATAAACTGAAGTGCCTCGTTATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGATGAATTGAGGCAGATTCTCAAGATCCTCCCAAAGGACAGGCAGACAGCTTTATTTTCCGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGGTTGTCATTTCAAGAGACTCCTATCTATATTGACGTAGACGATGGAAGAAAGAAGGTCACAAATGAAGGATTGCTTCAGGGTTATGTTGTTGTCCCCTGCGAAAAGCGATTTATGGTTCTCTATTCCTTCTTGAAGAGGCACCAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGCGTCAAATTCCATGCAGACATTTTTAATCACATCAATTTGCATTGTGCAAGTATTTATGGAAAACAAAAGCAGCAGACGCGGACAACTACTTTCTTTGCCTTCTGCAAAGCAGAAAATGGAGTCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTAGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCGCCCGATGAACCAAAGGAATATATTCACAGGGTTGGTAGAACAGCTCGCGGGGAAGCCGGAAAAGGCAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGAAGCTAAGGTTCCTGTGAAAGAATACGCGTATGATGAAAAGAAGGTGGCAAACGTACAGTCTCACCTGGAGAATTTGGTTGGCGAAAATTATTTTTTGAACAAAATGGCTAAAGAAGCTTATAGATCATACATATTAGCATACAATTCACATTCCATGAAGGATATATTCAGTGTTAAACGCCTTGATTTACAGGCTGTTGCGGCTTCATTCTGTTTTCCGAACCCTCCAAATGTGAGTATAAATATAAACACCAGCAATCAAAGAAAGAAAACACGTAAAGTTGATGGAAGTAGACATGGATTCAACCCCAACAATCCTTATGGAAAGCGAAATGCTGATGATAAGCGACAATTTGTGAGGCATTGA 1731 0.3957 MAEPENNLQVSSSMNETNNKHKQKKKHDKKRPRDIVEEEEENVNNTHSNGESSKKKKNKKNKEEENEVEVENELEEKKVKNNSGSGIMSNESFASLELSNSTSKAIMDMGFQNMTQIQARAIPPLLNGKNVLGAARTGSGKTLAFLIPAVELLHKLKFNPRDGAGVVVICPTRELAIQTHDVAKELLKYHSQTLGLLIGGSSRKTEAQHLAKGINIVVATPGRLLDHLQNTKRFIHNKLKCLVIDEADRILEANFEDELRQILKILPKDRQTALFSATQTKKVEDLARLSFQETPIYIDVDDGRKKVTNEGLLQGYVVVPCEKRFMVLYSFLKRHQSKKVMVFFSSCNSVKFHADIFNHINLHCASIYGKQKQQTRTTTFFAFCKAENGVLLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEAGKGNALLFLIPEELQFLRYLKEAKVPVKEYAYDEKKVANVQSHLENLVGENYFLNKMAKEAYRSYILAYNSHSMKDIFSVKRLDLQAVAASFCFPNPPNVSININTSNQRKKTRKVDGSRHGFNPNNPYGKRNADDKRQFVRH 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04364 576 CDD SF2_C_DEAD 312 442 - -
Trre15g04364 576 Gene3D - 34 301 IPR027417 -
Trre15g04364 576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 311 481 IPR001650 -
Trre15g04364 576 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Trre15g04364 576 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 243 251 IPR000629 -
Trre15g04364 576 SMART ultradead3 110 315 IPR014001 -
Trre15g04364 576 SMART DUF4217_3 472 535 IPR025313 -
Trre15g04364 576 MobiDBLite consensus disorder prediction 1 17 - -
Trre15g04364 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 454 IPR027417 -
Trre15g04364 576 MobiDBLite consensus disorder prediction 1 86 - -
Trre15g04364 576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 297 IPR014001 -
Trre15g04364 576 FunFam RNA helicase 308 538 - -
Trre15g04364 576 Pfam Helicase conserved C-terminal domain 327 431 IPR001650 -
Trre15g04364 576 MobiDBLite consensus disorder prediction 30 80 - -
Trre15g04364 576 CDD DEADc_DDX18 102 299 IPR044773 GO:0003724|GO:0005524
Trre15g04364 576 PANTHER RNA HELICASE 44 478 - -
Trre15g04364 576 Pfam DEAD/DEAH box helicase 115 286 IPR011545 GO:0003676|GO:0005524
Trre15g04364 576 Pfam Domain of unknown function (DUF4217) 473 533 IPR025313 -
Trre15g04364 576 SMART helicmild6 351 432 IPR001650 -
Trre15g04364 576 Coils Coil 53 80 - -
Trre15g04364 576 Gene3D - 310 549 IPR027417 -
Trre15g04364 576 MobiDBLite consensus disorder prediction 536 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04364 Trre-Chr15 54243166 54249485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04364 91 446 Eukaryotic Initiation Factors Gene Family AT1G72730 31.389 1.27e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04364 K13179 - gmx:100798885 881.708