Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04361 ATGGATCCCATGGATATCGTCGGAAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACAATGACAAAAATAATTAAAGAGATGTTACCTCCAGATGTACGCGTTGCAAGAGACACCCAAGATCTATTGATTGAGTGCTGTGTAGAGTTTATAAATCTCGTCTCATCAGAGTCCAATGAAGTATGTAGTAGAGAGGACAAACAGACTATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTGGTGAGTACATTGAAGAAGTTTGTGCAGCATACGAACAGCACAAGCTGGAGACCATGCAGGACTCTTTAAAAGGTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAACAACAAAGAATGTTTGCAGAGGCACGTGCTAGGATGAACGGCGGCGCCATTGCTTCTAAGCAGCCAGATGGTGACCAAAGTTTAGATAGCTAA 471 0.4374 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCSREDKQTIAPEHVLKALQVLGFGEYIEEVCAAYEQHKLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDGDQSLDS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04361 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Trre15g04361 156 FunFam Negative cofactor 2 beta 6 143 - -
Trre15g04361 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Trre15g04361 156 Gene3D Histone, subunit A 4 143 IPR009072 GO:0046982
Trre15g04361 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04361 Trre-Chr15 54221499 54224663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04361 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 83.117 2.32e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre15g04361 CBFD_NFYB_HMF 4.1e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04361 K21751 - gmx:100807912 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04361 15 54221499 54224663 Trre15g04361 15 54221499 54224663 ECH