Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04356 ATGGAAAACAAAGACACCTCAAAACCTCCAAACCTAACTCATCAAACTCACAACAACAACAACAAAAAGATGTCTTTGATCTCTCATGAAATAGATAAATCCAATGAGAAGAAAAAAAGTACTATAAAGAAAATTCCAAAAATATCAAACAAGGGTCAGAAAAAGTATCTAGGAGTAAGACAAAGACCTTCAGGAAGATGGATAGCAGAGATCAAAGACTCATCACAGAAACTAAGACTATGGTTAGGAACTTTTGACAAAGCAGAAGATGCTGCTATGTCTTATGACTCTGCTGCAAGACTTCTTAGAGGAAGAAATGCAAAAACAAATTTTCCAAATACTCATGAACAAGATTTCAGCATTTTAGGAAAGAATCCTAGAGCTTTTCAGCTTCTTAAACATGCAGTGATGAAAAACCATGCAGTTTCATCTTCTTCATCTGTTTATTCAACTGTCATGTTGCCATGGAAAAATGATCAACTCGACGCGGTTGTCGAAGAAACTATTGTTTGTTCCATTCCTGATGAAGGTGAAGATTCTGCTATTGGGTGTAGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTTAATTAG 618 0.3528 MENKDTSKPPNLTHQTHNNNNKKMSLISHEIDKSNEKKKSTIKKIPKISNKGQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEDAAMSYDSAARLLRGRNAKTNFPNTHEQDFSILGKNPRAFQLLKHAVMKNHAVSSSSSVYSTVMLPWKNDQLDAVVEETIVCSIPDEGEDSAIGCSGISFGSSKVYSSVVVAPSFN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04356 205 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Trre15g04356 205 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Trre15g04356 205 MobiDBLite consensus disorder prediction 8 25 - -
Trre15g04356 205 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 149 - -
Trre15g04356 205 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
Trre15g04356 205 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Trre15g04356 205 MobiDBLite consensus disorder prediction 26 41 - -
Trre15g04356 205 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Trre15g04356 205 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Trre15g04356 205 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Trre15g04356 205 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Trre15g04356 205 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Trre15g04356 205 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04356 Trre-Chr15 54124018 54124635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04356 37 113 AP2-EREBP Transcription Factor Family AT5G19790 58.974 2.30e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g04356 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04356 - K09286 gmx:100807374 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04356 15 54124018 54124635 Trre15g04356 15 54124018 54124635 ECH