Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04342 ATGGCACAAGAAACCGTTTCTGGTGCTGAATCTCCTCAGCGTCGTCAAGGTTTATTACGAGATCAAGTTCAACTTGTTAAAAGAAAGGATTCATCATCATCATCTGATCGTTATGAAATTGTTCCAATTCAAGATTCTTTATCTTTTGAGAAAGGATTCTTCATTGTTATTCGTGCTTGTCAGTTATTGGCTCAAAATAACGATGGAATTGTTTTAGTTGGAGTTGCTGGTCCTTCTGGTGCTGGCAAAACTGTTTTTACTGATAAGGTTTTCAGTTTTATGCCCAGTATTGCTGTTATATCCATGGATAATTATAATGATGCTAGTCGAATCATTGATGGAAACTTTGATGACCCTCGATTGACGGATTATGATACGTTGCTAAAAAATATACAGGATCTTAAATCAGGGAAGCCTGTTCAGGTTCCGATATATGATTTCAAGTCTAGTTCTCGCATCGGATACAGGACTATTGAAGTCCCTAGCTCCCGTATTGTAATCATTGAAGGCATATATGCCTTAAGTGAGAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTAAAAACAGCGCATATAAAAATTATTAACAAGTTTAATCCATTCACTGGGTTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAGATGTGACAGTGGATCAAATCAAGGCAGTTATTGCTTCAGAGCATACTGAAACCAATGAGGAAACATATGACATATATCTTCTACCCCCTGGAGAAGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACAGGGATGGGAAGTACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCGGCAATCCTGAAAAGAAGCAGCCATGTCTTTCACGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAATCGCCAATATGTCCAGGTACAAGGGAAAGATAGAAACTATGTTAAATTTGTGGCGGAGAAACTGGGTTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAACTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGACAAAACTCAGCATAGAAGATGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCCAGAGCTTCTGCGGATAGGAGAATGAAGTATCTTAATCGTGGTGTTTCACAGTCATATTCAAATCAAAGGGACAAGATTCTACCTAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGGGAGAGCTCTAGAATCACCTGCTCCGATGGCCAACCAAGGAGTTATCATTCAACTTTCTGATCAAATTTCCACACTAAATGAAAGAATGGATGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTTGACGTTAAAAAAGCTTCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCTTTCTTTGTTACTGGATTAGGAAATGGTTCATTAACTGCTGGATCATTGCTTCCTCATTCTACATCATCCTCTCAACTTGTTAGAGAGTCTCCTCTGATGGAAGAGGTATTGCTTGTTGCACGAGGACAGCGCCAAATCATGCATCAACTAGACACTCTGAGCAATCTTATGCACGAATACTTCGGAGAAAGATCGCGGCCTGGAAGAACAGACCAGGCAGGCAGAGTGCGTGAAGTTGAATCTGTTGCCGTCCCCCTGGTTCTGACTTTGGCCATTGGTGCTGTTGGTGTGCTCTTTTTCAAGGGTTTGACATCTAAAAAATAA 2001 0.4033 MAQETVSGAESPQRRQGLLRDQVQLVKRKDSSSSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVFSFMPSIAVISMDNYNDASRIIDGNFDDPRLTDYDTLLKNIQDLKSGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQNPTYILKSAKDVTVDQIKAVIASEHTETNEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKTKLSIEDDLVSSPKEALSRASADRRMKYLNRGVSQSYSNQRDKILPKLTKLAINNRSFNGRALESPAPMANQGVIIQLSDQISTLNERMDEFTSRIEELNSKFDVKKASASQQNLALQAEACNGSGPTSFFVTGLGNGSLTAGSLLPHSTSSSQLVRESPLMEEVLLVARGQRQIMHQLDTLSNLMHEYFGERSRPGRTDQAGRVREVESVAVPLVLTLAIGAVGVLFFKGLTSKK 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04342 666 CDD UMPK_like 72 244 - -
Trre15g04342 666 Gene3D - 262 418 - -
Trre15g04342 666 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g04342 666 ProSiteProfiles CYTH domain profile. 253 415 IPR023577 -
Trre15g04342 666 Pfam CYTH domain 274 409 IPR023577 -
Trre15g04342 666 Pfam Phosphoribulokinase / Uridine kinase family 73 241 IPR006083 GO:0005524|GO:0016301
Trre15g04342 666 SUPERFAMILY CYTH-like phosphatases 265 412 IPR033469 -
Trre15g04342 666 PANTHER URIDINE KINASE 17 428 - -
Trre15g04342 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 241 IPR027417 -
Trre15g04342 666 Coils Coil 505 532 - -
Trre15g04342 666 Gene3D - 71 261 IPR027417 -
Trre15g04342 666 PRINTS Uridine kinase signature 70 87 - -
Trre15g04342 666 PRINTS Uridine kinase signature 137 152 - -
Trre15g04342 666 PRINTS Uridine kinase signature 193 203 - -
Trre15g04342 666 PRINTS Uridine kinase signature 229 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04342 Trre-Chr15 54019545 54026159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04342 72 241 PRT Gene Family AT5G40870 29.050 3.80e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04342 K00876 - gmx:100803122 1154.43