Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04341 ATGGCACAAGAAACCGTTTCTGGTGCTGAATCTCCTCAGCGTCGTCAAGGTTTATTACGAGATCAAGTTCAACTTGTTAAAAGAAAGGATTCATCATCATCATCTGATCGTTATGAAATTGTTCCAATTCAAGATTCTTTATCTTTTGAGAAAGGATTCTTCATTGTTATTCGTGCTTGTCAGTTATTGGCTCAAAATAACGATGGAATTGTTTTAGTTGGAGTTGCTGGTCCTTCTGGTGCTGGCAAAACTGTTTTTACTGATAAGGTTTTCAGTTTTATGCCCAGTATTGCTGTTATATCCATGGATAATTATAATGATGCTAGTCGAATCATTGATGGAAACTTTGATGGTATAGATCTTAAATCAGGGAAGCCTGTTCAGGTTCCGATATATGATTTCAAGTCTAGTTCTCGCATCGGATACAGGACTATTGAAGTCCCTAGCTCCCGTATTGTAATCATTGAAGGCATATATGCCTTAAGTGAGAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTAAAAACAGCGCATATAAAAATTATTAACAAGTTTAATCCATTCACTGGGTTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAGATGTGACAGTGGATCAAATCAAGGCAGTTATTGCTTCAGAGCATACTGAAACCAATGAGGAAACATATGACATATATCTTCTACCCCCTGGAGAAGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACAGGGATGGGAAGTACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCGGCAATCCTGAAAAGAAGCAGCCATGTCTTTCACGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAATCGCCAATATGTCCAGGTACAAGGGAAAGATAGAAACTATGTTAAATTTGTGGCGGAGAAACTGGGTTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAACTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGACAAAACTCAGCATAGAAGATGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCCAGAGCTTCTGCGGATAGGAGAATGAAGTATCTTAATCGTGGTGTTTCACAGTCATATTCAAATCAAAGGGACAAGATTCTACCTAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGGGAGAGCTCTAGAATCACCTGCTCCGATGGCCAACCAAGGAGTTATCATTCAACTTTCTGATCAAATTTCCACACTAAATGAAAGAATGGATGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTTGACGTTAAAAAAGCTTCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCTTTCTTTGTTACTGGATTAGGAAATGGTTCATTAACTGCTGGATCATTGCTTCCTCATTCTACATCATCCTCTCAACTTGTTAGAGAGTCTCCTCTGATGGAAGAGGTATTGCTTGTTGCACGAGGACAGCGCCAAATCATGCATCAACTAGACACTCTGAGCAATCTTATGCACGAATACTTCGGAGAAAGATCGCGGCCTGGAAGAACAGACCAGGCAGGCAGAGTGCGTGAAGTTGAATCTGTTGCCGTCCCCCTGGTTCTGACTTTGGCCATTGGTGCTGTTGGTGTGCTCTTTTTCAAGGGTTTGACATCTAAAAAATAA 1962 0.4037 MAQETVSGAESPQRRQGLLRDQVQLVKRKDSSSSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVFSFMPSIAVISMDNYNDASRIIDGNFDGIDLKSGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQNPTYILKSAKDVTVDQIKAVIASEHTETNEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKTKLSIEDDLVSSPKEALSRASADRRMKYLNRGVSQSYSNQRDKILPKLTKLAINNRSFNGRALESPAPMANQGVIIQLSDQISTLNERMDEFTSRIEELNSKFDVKKASASQQNLALQAEACNGSGPTSFFVTGLGNGSLTAGSLLPHSTSSSQLVRESPLMEEVLLVARGQRQIMHQLDTLSNLMHEYFGERSRPGRTDQAGRVREVESVAVPLVLTLAIGAVGVLFFKGLTSKK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04341 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 228 IPR027417 -
Trre15g04341 653 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g04341 653 ProSiteProfiles CYTH domain profile. 240 402 IPR023577 -
Trre15g04341 653 Coils Coil 492 519 - -
Trre15g04341 653 Gene3D - 71 236 IPR027417 -
Trre15g04341 653 PANTHER URIDINE KINASE 17 415 - -
Trre15g04341 653 CDD UMPK_like 72 231 - -
Trre15g04341 653 Gene3D - 245 405 - -
Trre15g04341 653 Pfam Phosphoribulokinase / Uridine kinase family 120 228 IPR006083 GO:0005524|GO:0016301
Trre15g04341 653 Pfam CYTH domain 261 396 IPR023577 -
Trre15g04341 653 SUPERFAMILY CYTH-like phosphatases 252 399 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04341 Trre-Chr15 54019545 54026159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04341 72 228 PRT Gene Family AT5G40870 27.374 4.91e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04341 K00876 - gmx:100803122 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04341 15 54019545 54026159 Trre15g04341 15 54019545 54026159 ECH
Trre7g01920 7 15086103 15100770 Trre15g04341 15 54019545 54026159 PCT