Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04339 ATGGGTTGCTCTTTCTCCGGTTTAAACGCATTATACGATTCTGTAAACGGTGGTGGTGATGTTTGGATCAACGAGAATCGATTCCGAATCTTGAGACAGCTCGGTGAAGGTGGATTCGCTTTCGTTTATCTCGTTAAGGAAGCTCCTAATGACTCTGCTACCGGTGGTCTCGCTAATAAACTCAAAGACTCTTCTCATCTCTCCGATGATGGATCTTATGCTATGAAAAAGGTTCTCATTCAGAACAACGAGCAGCTGGAGTTGGTCAGAGAGGAGATACGCGTCTCGTCACTGTTTAGTCACCCCAATCTCCTCCCACTTCTTGATCATGCAATCATTTCTGTTAAGCCTACCCCAGAAACATCTTGGAGCCATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGTTAGACAATGCCAAAACAATGAAAGCCAAAAAGGAACACTATTCTACCTCAGATGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGACTAAAGCACATGCACAATTTAGATCCTCCATATGCACACAATGATGTCAAACCTGGTAATGTTCTCCTAACACACAGAAAAGGACAATCACCACTGGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAGGCATATCAGCTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCATCTGAGCATTGCTCTGCTCCTTTCCGATCCCCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATAGACGAGAGGACTGACGTTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATGCTCAGGTCAAATGGCCAGCTGGACATAAACCTTCATATCCAGACGCTCTTCATCAGTTTGTGTCATGGATGCTTCAGCCCCAGGCTGCTATGCGGCCCAGGATAGACGATATCATTATCCATGTTGACAAATTGATTGCAAAGTTCTCTCAATGA 1029 0.449 MGCSFSGLNALYDSVNGGGDVWINENRFRILRQLGEGGFAFVYLVKEAPNDSATGGLANKLKDSSHLSDDGSYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISVKPTPETSWSHEAYLLFPVHLDGTLLDNAKTMKAKKEHYSTSDVLQIFRQLCAGLKHMHNLDPPYAHNDVKPGNVLLTHRKGQSPLAILMDFGSARPARRHISSRSEALQLQEWASEHCSAPFRSPELWDCPSHADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGHKPSYPDALHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFSQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04339 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 340 - -
Trre15g04339 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04339 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Trre15g04339 342 CDD STKc_16 27 338 - -
Trre15g04339 342 Gene3D Transferase(Phosphotransferase) domain 1 15 341 - -
Trre15g04339 342 Pfam Protein kinase domain 66 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04339 342 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Trre15g04339 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04339 Trre-Chr15 53996338 54000048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04339 33 332 EF-hand Containing Proteins AT4G04710 25.890 9.41e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Trre15g04339 Pkinase 6.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04339 K08856 - gmx:100803659 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04339 15 53996338 54000048 Trre15g04339 15 53996338 54000048 ECH