Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04333 ATGGCTGATGTTACCTATCTCCGTCACCATCACGAACCCGACGATGATCAAACCCTAATCCCTTTACCCTATTGGTCTTCCCCTTCCGATTTCGATTTCGATTTCGATTTTGATTTATACTCTTCCGATCCCGAATTCCCTTCCAATCACAACCACCACAACCACTTTTCTCGTGAGAATTTCGTCATGGATCTCTTTCAACAACGCGTGGAGCAATCTCATGTCATCGATCATGTCGATCCTGTGCATCAATCGCTAAACGACTCTTTTTTCGATAGTTTAAGTCTCGATTTAGGGTTCAATACTGCCGATTTCAATTTCGGTATCCATAACAACGTTGATGATGATGATGACGACGATGATTTTCCTGATTTGAGGGTTTCTGGATCAGATCCGATTAACGGCTTGCGTATTGTTGAAATCGATTCGGATTCCGACGGTGAAGAAGATGTTGAAGGAAATAATGTGTTTTACGGGATCTGTGTGCATTCTGATGAAGAAGATTTTAATAACGTAATCGATGAAGTTACGAATTTTCCTCTCCGTTGGGATTCGCTTCAGTTGGAGGATAATCAAATATATGAAGATTTTGAGTGGGAGGAAGTTGACGGTGGCGTAGACGCGAGGGATCTTCTTAACAGGCTTGCTCTTGAAGACAATAATAGGTCGGTTAATTCCGGTCGCGCCACTCCGTTTATTGAAGAAGATGTAGAAGATGGAGAAGAGGTTAACATGATGATGGTTGGTGGAGGAATGGAAAATCTTGAGTGGCAAGTATTGTTGAATTCGGATTCTGATAATATAGGCACAAGCCCTGAAACTTATCATGTAATTGCAGAGCCTTTTGGGGATAATGATGATTACATTTACACTGCAGAGTATGAGATGATGTTTAATGATAACCCGTTAACCGGTAGGCCTCCGGCTTCCGTAGCCGTTGTTCAGAACCTTCCTAATGAGGTTGTGACCAAAGATGATGTGGAGAATAACAATGCTTTGTGTGCGGTTTGTAAAGATGAATTTTCTGTTGGAGAAGGGGTGAAGTTGTTGCCGTGTTCTCATCGTTACCATGGTGATTGTATTGTGCCTTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGATATGAGTTCCCCACTGATGATGCTGATTATGAACGTAGGAAAGCCCCAATGTTGGCAAGGAGTGCTTGA 1194 0.4246 MADVTYLRHHHEPDDDQTLIPLPYWSSPSDFDFDFDFDLYSSDPEFPSNHNHHNHFSRENFVMDLFQQRVEQSHVIDHVDPVHQSLNDSFFDSLSLDLGFNTADFNFGIHNNVDDDDDDDDFPDLRVSGSDPINGLRIVEIDSDSDGEEDVEGNNVFYGICVHSDEEDFNNVIDEVTNFPLRWDSLQLEDNQIYEDFEWEEVDGGVDARDLLNRLALEDNNRSVNSGRATPFIEEDVEDGEEVNMMMVGGGMENLEWQVLLNSDSDNIGTSPETYHVIAEPFGDNDDYIYTAEYEMMFNDNPLTGRPPASVAVVQNLPNEVVTKDDVENNNALCAVCKDEFSVGEGVKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAPMLARSA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04333 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 381 IPR013083 -
Trre15g04333 397 SMART ring_2 334 374 IPR001841 -
Trre15g04333 397 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Trre15g04333 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 217 379 - -
Trre15g04333 397 FunFam E3 ubiquitin-protein ligase RING1-like 295 381 - -
Trre15g04333 397 SUPERFAMILY RING/U-box 320 381 - -
Trre15g04333 397 Pfam Ring finger domain 334 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04333 Trre-Chr15 53946506 53947699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04333 17 381 C3H Transcription Factor Family AT5G60820 36.790 4.64e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04333 - - mtr:25493924 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04333 15 53946506 53947699 Trre15g04333 15 53946506 53947699 ECH