Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04331 ATGTCGACTCCATTAGCTACCTCAAAGAAACGCCCAAAATCCGAACTGGAAGATGACCAAAACGACGATGATTGCTGCGGAATTTGCTACATGGAACGCGGAGTTCCAGTCCCGGGTAAAATTGATTCATGCAACCACTATTTTTGCTTCGTTTGCATAATGGAATGGGCGAAACACGAATCTCGATGCCCAATTTGTCGCCAGAGATTCTCAAACGTTCGTAGACTCCCTAAGCATGGCGTTTTTTCTTACCATAGGGATATTAAGGTCCCTATTCGTGACCAGGTTTATCATCCTCATGGAAATATGACAACTGGTCCTGTTGATTCCAATGCCGAACTCAAATGCAGTATTTGCGATGTCACGAAAGATGACAATCTTATAATAATATGTGATCTTTGTGATACTGCTTCCCATACATATTGTGTTGGCTTGGGCTACACCGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTGCTACTGCCCGGGAGACTAATGCTAATGACGGGTTAGACCAACAAAATGTTAAGCTAACGACTGAGCCTGGTGTAGCCATCTTAGATAATGTGAGAGGAACAAGCAGCCAAGTGTTCAGAAGACCAATGGCATCTCCTATACCACTTAACAATCATCCGTCTTCTAGTATTCCTTTACTTAATAGAGTGAGTAGATCTGAAGGTAAAAAACCTATGTCGGACGTCCAGCGTGCGAAACATAAGGTTCAGATGCTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTAAATTAAGTTTCAATAGCAAATCCTTTCAATCTGGTGGCACAAGTAGTCAAAAAGAAGATTCTAGTTCTTTATCACATGGCAAATTAGATGATTTACATTCAATGGCTTCCAAAGGCTGTCCACAATCCACAGTCCAAGGTGCTCAATCTAGTAACATGTTGACTAATGGTGGCGTTGAAGACGATGTACGCAAAGCTTGGAAGATGTGGGATAAGGTAAAGATGACGAAACAGACTCCTAGAAGACCTAGCAGCATTCCACAGGCAGTGGATAATGATCCTCCATGCAGTGGTGCTAGAGAAAAATCATCTGCACCTCGTAGTTGCCCAGAATTGAAAAACCAACAGCCCAGAACATTAGAGTTTAGGCGCATCAGAATGGAGGAGCAGCGTGACTATTCTAGTGTCCAAAAAAATTTGGAAAATCACCGGTCTCCAATATTGGGGGAGAAAAGGCAAAGTAGGATCACATGTGGCGAGATGCTACAACATGCGAGGAACAATACTACTTATTCAGAAGGATACAGGGAACGTCCATTGCCCGGAAAGGCCCATACTAGTACCCACGGTGCTCCTTGTCACGAAGAAAGAATTGTTGCAAAGGAACAAAGACAGTCTGCTAATTTGGTAACTTCAGTAGGTTCAGCACCCTCTAGTGGCCAATCTGGCCGTGTCTTCACCTCTAACAAGGATATGGAAATTTTCAATAAAGAAAAGAGGTTGGCCAAAAGCTTTGGGAATGGGATCGCGAAAAATATTGAGGATGCAAAAACAGAGATCCAGACTCTTGTTAAACTGAATCTGAAGTGCTTAACTAGAGATACACAATTAGGTGTCGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACCCATACCATCTTGGCTGCTTGCCATTCAGAGTACTCCTCAAACTCAGTATGCAGCCACACTGACAATATTCTACAGTTTCAGAAGTCAAATTTAATGCCCAATAGTTGCCGACAATGCTTTAATATCTTTGTAAATGATGTTGTCAAGTCCATCATGTTGGAAAAGGTAGGTTGTTCTTGA 1815 0.4242 MSTPLATSKKRPKSELEDDQNDDDCCGICYMERGVPVPGKIDSCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPKHGVFSYHRDIKVPIRDQVYHPHGNMTTGPVDSNAELKCSICDVTKDDNLIIICDLCDTASHTYCVGLGYTVPEGDWFCHDCAATARETNANDGLDQQNVKLTTEPGVAILDNVRGTSSQVFRRPMASPIPLNNHPSSSIPLLNRVSRSEGKKPMSDVQRAKHKVQMLRENWNSLRSGKLSFNSKSFQSGGTSSQKEDSSSLSHGKLDDLHSMASKGCPQSTVQGAQSSNMLTNGGVEDDVRKAWKMWDKVKMTKQTPRRPSSIPQAVDNDPPCSGAREKSSAPRSCPELKNQQPRTLEFRRIRMEEQRDYSSVQKNLENHRSPILGEKRQSRITCGEMLQHARNNTTYSEGYRERPLPGKAHTSTHGAPCHEERIVAKEQRQSANLVTSVGSAPSSGQSGRVFTSNKDMEIFNKEKRLAKSFGNGIAKNIEDAKTEIQTLVKLNLKCLTRDTQLGVETFKVVARQATHTILAACHSEYSSNSVCSHTDNILQFQKSNLMPNSCRQCFNIFVNDVVKSIMLEKVGCS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04331 604 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
Trre15g04331 604 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g04331 604 MobiDBLite consensus disorder prediction 292 312 - -
Trre15g04331 604 SMART ring_2 26 66 IPR001841 -
Trre15g04331 604 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Trre15g04331 604 SMART PHD_3 115 160 IPR001965 -
Trre15g04331 604 SUPERFAMILY RING/U-box 16 83 - -
Trre15g04331 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Trre15g04331 604 SUPERFAMILY FYVE/PHD zinc finger 108 161 IPR011011 -
Trre15g04331 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 172 IPR013083 -
Trre15g04331 604 Pfam PHD-finger 116 160 IPR019787 -
Trre15g04331 604 MobiDBLite consensus disorder prediction 259 314 - -
Trre15g04331 604 MobiDBLite consensus disorder prediction 259 277 - -
Trre15g04331 604 MobiDBLite consensus disorder prediction 329 372 - -
Trre15g04331 604 PANTHER F18C1.6 PROTEIN 12 601 - -
Trre15g04331 604 Pfam Ring finger domain 25 67 IPR001841 -
Trre15g04331 604 ProSitePatterns Zinc finger C2H2 type domain signature. 63 85 IPR013087 -
Trre15g04331 604 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04331 Trre-Chr15 53935478 53938271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04331 116 164 C2H2 Transcription Factor Family AT3G01460 40.000 2.14e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre15g04331 PHD 1.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04331 - - tpra:123885278 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04331 15 53935478 53938271 Trre15g04331 15 53935478 53938271 ECH