Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04328 ATGGAGCTTCCTCAATCACGTCCTTGTGGAGCCGAAGGGAGGAAACCGACGCATGATTTTCTGTCGCTCTACAGTAATCAAACTGGCGAACAAGATCCAAGGCCATCTGCTCAAGCTAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAACAAGTAGAAACGAAATCCGATACCAAGGAAGAAGCCACTGATGAAATCTCATCCGTGGTTCAGAAGCAACCACCGCCTTTAGCAACACCAGCTTCAGTTGAGCACATCTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTACATCAATAATAATAATAATAATAATAAAAGGATTCCAAAGCCAGAAGCATCACTTTTTGGTGTGCATCAAGCAACCAGTGCGGATAGAAACGATGACAACTCCAACTGCAGTTCACATACGTCGAGCGGTTTCACATTGTGGGAAGAGTCTGACATTAAAAAGGGAAAGACAGGGAAAGAGAATATTGTTGGCGAGAAACCCCTTATAGGAGTGGCAGATTCTGCTGCTACGCTGGGGCAGTGGACATTGACGGAGCGAACATCTCAATCGTTTTCTAACAATCGTCATGGCAGCTTCAACTCCCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACCTTTTTTCTCAAGAGAGAATCCTCCAATACTCAAAGGGGAGAATTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCGAGATCAAAACATTCTGCAACAGAACAGAGGAGAAGAAGCAAAATTAATGACAGGTTTCAAATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGCAGAGAAATAATGACCGGCCAGCAGAAAGTTTTCAACCTCGTGGCACAAACAGCGGGCCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATATGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATCATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGCAGTGTCTCAACTCAGACATAGATTAACATCTGATGCAGAGAACACGATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACGCTTACACAAGCCTTGCAGAGTTCAGGAGTGGATTTGTCACAAGCTAACATTTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAGCCTCAGACCAAACGTACCTATGTCAATGTGTGTTTCTAAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAGATACGCTCTAGAGTCACTGGCTCTGACAAGTCGGATCAAGCAATAAAGAAGCTAAAGACATGCAGAAGTTAA 1722 0.4292 MELPQSRPCGAEGRKPTHDFLSLYSNQTGEQDPRPSAQASYLKTHDFLRPLEQVETKSDTKEEATDEISSVVQKQPPPLATPASVEHILPGGIGTYSISHINSYINNNNNNNKRIPKPEASLFGVHQATSADRNDDNSNCSSHTSSGFTLWEESDIKKGKTGKENIVGEKPLIGVADSAATLGQWTLTERTSQSFSNNRHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWQRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHNMESGLTTPTAFKTMDHQSGIMNKALPIPISSQPNFFTSSQIGGSGGAVSQLRHRLTSDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQANISVQIELGKQASLRPNVPMSMCVSKDDEDPSKNQRKIRSRVTGSDKSDQAIKKLKTCRS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04328 573 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 342 IPR036638 GO:0046983
Trre15g04328 573 SMART finulus 276 326 IPR011598 GO:0046983
Trre15g04328 573 MobiDBLite consensus disorder prediction 241 286 - -
Trre15g04328 573 MobiDBLite consensus disorder prediction 20 38 - -
Trre15g04328 573 Pfam Helix-loop-helix DNA-binding domain 272 321 IPR011598 GO:0046983
Trre15g04328 573 Gene3D - 267 342 IPR036638 GO:0046983
Trre15g04328 573 MobiDBLite consensus disorder prediction 530 573 - -
Trre15g04328 573 MobiDBLite consensus disorder prediction 55 79 - -
Trre15g04328 573 CDD bHLH_AtBIM_like 269 345 - -
Trre15g04328 573 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 570 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre15g04328 573 MobiDBLite consensus disorder prediction 341 367 - -
Trre15g04328 573 MobiDBLite consensus disorder prediction 1 38 - -
Trre15g04328 573 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 320 IPR011598 GO:0046983
Trre15g04328 573 MobiDBLite consensus disorder prediction 539 573 - -
Trre15g04328 573 MobiDBLite consensus disorder prediction 249 286 - -
Trre15g04328 573 FunFam BHLH domain class transcription factor 268 340 - -
Trre15g04328 573 MobiDBLite consensus disorder prediction 191 217 - -
Trre15g04328 573 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04328 Trre-Chr15 53873465 53880715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04328 1 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.890 5.31e-125 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g04328 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04328 - - gmx:100808016 834.328