Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04326 ATGGAGCTTCCTCAATCACGTCCTTGTGGAGCCGAAGGGAGGAAACCGACGCATGATTTTCTGTCGCTCTACAGTAATCAAACTGGCGAACAAGATCCAAGGCCATCTGCTCAAGCTAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAACAAGTAGAAACGAAATCCGATACCAAGGAAGAAGCCACTGATGAAATCTCATCCGTGGTTCAGAAGCAACCACCGCCTTTAGCAACACCAGCTTCAGTTGAGCACATCTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTACATCAATAATAATAATAATAATAATAAAAGGATTCCAAAGCCAGAAGCATCACTTTTTGGTGTGCATCAAGCAACCAGTGCGGATAGAAACGATGACAACTCCAACTGCAGTTCACATACGTCGAGCGGTTTCACATTGTGGGAAGAGTCTGACATTAAAAAGGGAAAGACAGGGAAAGAGAATATTGTTGGCGAGAAACCCCTTATAGGAGATTCTGCTGCTACGCTGGGGCAGTGGACATTGACGGAGCGAACATCTCAATCGTTTTCTAACAATCGTCATGGCAGCTTCAACTCCCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACCTTTTTTCTCAAGAGAGAATCCTCCAATACTCAAAGGGGAGAATTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCGAGATCAAAACATTCTGCAACAGAACAGAGGAGAAGAAGCAAAATTAATGACAGGTTTCAAATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGACCGGCCAGCAGAAAGTTTTCAACCTCGTGGCACAAACAGCGGGCCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATATGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATCATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGCAGTGTCTCAACTCAGACATAGATTAACATCTGATGCAGAGAACACGATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACGCTTACACAAGCCTTGCAGAGTTCAGGAGTGGATTTGTCACAAGCTAACATTTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAGCCTCAGACCAAACGTACCTATGTCAATGTGTGTTTCTAAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAGATACGCTCTAGAGTCACTGGCTCTGACAAGTCGGATCAAGCAATAAAGAAGCTAAAGACATGCAGAAGTTAA 1713 0.4279 MELPQSRPCGAEGRKPTHDFLSLYSNQTGEQDPRPSAQASYLKTHDFLRPLEQVETKSDTKEEATDEISSVVQKQPPPLATPASVEHILPGGIGTYSISHINSYINNNNNNNKRIPKPEASLFGVHQATSADRNDDNSNCSSHTSSGFTLWEESDIKKGKTGKENIVGEKPLIGDSAATLGQWTLTERTSQSFSNNRHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHNMESGLTTPTAFKTMDHQSGIMNKALPIPISSQPNFFTSSQIGGSGGAVSQLRHRLTSDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQANISVQIELGKQASLRPNVPMSMCVSKDDEDPSKNQRKIRSRVTGSDKSDQAIKKLKTCRS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04326 570 MobiDBLite consensus disorder prediction 20 38 - -
Trre15g04326 570 MobiDBLite consensus disorder prediction 239 283 - -
Trre15g04326 570 MobiDBLite consensus disorder prediction 55 79 - -
Trre15g04326 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 318 IPR011598 GO:0046983
Trre15g04326 570 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 567 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre15g04326 570 MobiDBLite consensus disorder prediction 189 215 - -
Trre15g04326 570 MobiDBLite consensus disorder prediction 536 570 - -
Trre15g04326 570 FunFam BHLH domain class transcription factor 266 338 - -
Trre15g04326 570 MobiDBLite consensus disorder prediction 337 363 - -
Trre15g04326 570 Gene3D - 265 340 IPR036638 GO:0046983
Trre15g04326 570 MobiDBLite consensus disorder prediction 1 38 - -
Trre15g04326 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 340 IPR036638 GO:0046983
Trre15g04326 570 MobiDBLite consensus disorder prediction 528 570 - -
Trre15g04326 570 SMART finulus 274 324 IPR011598 GO:0046983
Trre15g04326 570 Pfam Helix-loop-helix DNA-binding domain 270 319 IPR011598 GO:0046983
Trre15g04326 570 CDD bHLH_AtBIM_like 267 343 - -
Trre15g04326 570 MobiDBLite consensus disorder prediction 247 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04326 Trre-Chr15 53873465 53880715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04326 1 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.514 8.97e-124 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g04326 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04326 - - gmx:100808016 832.402