Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04323 ATGCAGGAAATACATTCCATCGGAGGCGGCGGCGGCGGAACCAGGTTCTTCGGTGGCGGTGACCGGAGACTCAGACCAAACCAAAACAACACCAACAACAACAACCAGACCCAACCAGTCTTGAAATGTCCTCGCTGTGAATCCATCAACACAAAATTCTGTTACTATAATAACTATAACCTCTCTCAGCCACGTCACTTCTGCAAAAACTGCCGTCGTTACTGGACTAAAGGCGGTGTCCTCCGTAACGTCCCTGTCGGTGGCGGTTGTCGTAAATCTAAACGCTCCAGTAAGCCAAAAAACTCTTCATCCTCTTCGGAAGTCTCTGCTTTGCCGATGACTCCACCGGAGAACAAATCAAACTCTCACTCAAGCAGTGAGAGTTCTAGCCTCACCGCTGCGGCGGTGACAGATACTGTTTCAGAACAAAAACCGCCAAACTCTAACACGAAAATCAACACTGGTTTGGAGAATGATTCACTTGAACAAGGTTCAGGTGATTGCGGTATTTTCTCAGAGATCGCGAATTTTACAAGCTTGATTACTTCTTCCTCCAACGAAACATTGCCGTTTGGATTCGGTAACAGTAACGGTAACGGTAACGTTAACTGTATCACCGATGCGTCGTCGTTTCAGTGGCAAAACCAGAAAGTGATGACCGTTACCGGCGATCAACAGAGTCATCATGAAGATGCATTGAAGTTGTTACCGGAGAATATTGGTTCTGGATCGATGATGGACCATAGTATAGATTTCTCTTTGCTGCAGAGTAAAACTAGCAACGGTGGATTTGGATCGTTGGATTGGCAAGGTGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAAGGTTACTGGAATCATACTCACTGGTCTGATCAGGATAATGACAATTCTACCCTCTTTCATCTTCCTTGA 927 0.4585 MQEIHSIGGGGGGTRFFGGGDRRLRPNQNNTNNNNQTQPVLKCPRCESINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKNSSSSSEVSALPMTPPENKSNSHSSSESSSLTAAAVTDTVSEQKPPNSNTKINTGLENDSLEQGSGDCGIFSEIANFTSLITSSSNETLPFGFGNSNGNGNVNCITDASSFQWQNQKVMTVTGDQQSHHEDALKLLPENIGSGSMMDHSIDFSLLQSKTSNGGFGSLDWQGGADQGLFDLPNTVDQGYWNHTHWSDQDNDNSTLFHLP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04323 308 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Trre15g04323 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 218 IPR045174 GO:0003700|GO:0006355
Trre15g04323 308 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Trre15g04323 308 MobiDBLite consensus disorder prediction 24 40 - -
Trre15g04323 308 MobiDBLite consensus disorder prediction 99 159 - -
Trre15g04323 308 MobiDBLite consensus disorder prediction 86 159 - -
Trre15g04323 308 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Trre15g04323 308 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04323 Trre-Chr15 53802389 53803315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04323 21 308 C2C2-Dof Transcription Factor Family AT5G60850 39.557 8.44e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre15g04323 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04323 - - mtr:25493917 407.527