Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04311 ATGGGGAGAGGAAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCACATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATAGTTTTCTCTACTAAAGGCAAGCTTTATGATTACTCAAGTGATCCTTGTATGGAAAGAATTCTCGAACGATATGAGAGATATTCTTATACAGAGAGACAGCTTGTTACAAATGATCAATCACCAAATGAAAATTGGGTTCTAGAACATGCAAAACTGAAGGCAAGAATGGAAGTACTTCAAAGAAATCAAAGGAATTATATGGGAGAGGATTTGGATGGCTTAAGTCTCAAAGAGCTTCAGAATTTGGAACAACAACTTGATTCCTCTCTCAAACACATTAGATCACGAAAGAATCAAATCATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCTCTCCAGGAACACAACAACTTGCTTGCCAAGAAGATTAAGGAAAAAGAGAAGGAACTTGCTCAAAAGGAGCAGCAAAATAGTATGGAGGTGAATCCAATTGAAACTCAACCATTGGAATCCATGATAACTACTGGAGGGTTAGTGTCTTTTCTTTTATCTGCTTCATAA 648 0.3673 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYDYSSDPCMERILERYERYSYTERQLVTNDQSPNENWVLEHAKLKARMEVLQRNQRNYMGEDLDGLSLKELQNLEQQLDSSLKHIRSRKNQIMYESISELQKKDKALQEHNNLLAKKIKEKEKELAQKEQQNSMEVNPIETQPLESMITTGGLVSFLLSAS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04311 215 Coils Coil 122 145 - -
Trre15g04311 215 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Trre15g04311 215 Coils Coil 88 115 - -
Trre15g04311 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre15g04311 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre15g04311 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g04311 215 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre15g04311 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre15g04311 215 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g04311 215 Coils Coil 154 185 - -
Trre15g04311 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Trre15g04311 215 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g04311 215 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Trre15g04311 215 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Trre15g04311 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre15g04311 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre15g04311 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04311 Trre-Chr15 53687785 53697513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04311 1 185 MADS-box Gene Family AT1G26310 67.380 9.54e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre15g04311 K-box 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04311 K09264 K09260 zju:107410106 310.457