Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04310 ATGATGAAAACATTGGAAAAATACCAAAAGTACAGCTACAGTGAACTGGAGGCCAGCCAACCAGCCAATACCACTCAGAATTACCAGGACTATGTGAGATTAAAAGCCAATGTAGAAATCTTACAACGTTCCCAAAGGAACCTTCTTGGGGAAGATATTGCACTAAAGAATACAAGTGAGCTCGAACAGCTTGAAAATCAATTGGAGGCAGCACTTAAGAATATAAGATCATCTAAGACTCAGTTCATGCTTGATCAACTTGCCGATCTTCACAATCGGGAAAAGGAGCTTGTTGAAACAAATAATGCTCTAAGAAGTAAGCTTGAAGAAACTGATCATAACTCACAAGTTCCAGGTAGATTGTTGGCGGTTGGTTCTGATTTCCATCATACACGCTTTCCTCCTCAATCAGAGGGGTTTTTCCACCATGTGGGAGTCAATTCCAACTTCCAATTTGGATACAATCCAATGGATTCTGATGATGTAAATGTTGGAGCTTCATCCATAAGTAAGAATGGATTCGCCTCTATGACATGGACGCTTTGA 546 0.4029 MMKTLEKYQKYSYSELEASQPANTTQNYQDYVRLKANVEILQRSQRNLLGEDIALKNTSELEQLENQLEAALKNIRSSKTQFMLDQLADLHNREKELVETNNALRSKLEETDHNSQVPGRLLAVGSDFHHTRFPPQSEGFFHHVGVNSNFQFGYNPMDSDDVNVGASSISKNGFASMTWTL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04310 181 Coils Coil 87 107 - -
Trre15g04310 181 Coils Coil 54 81 - -
Trre15g04310 181 Pfam K-box region 24 108 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g04310 181 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04310 Trre-Chr15 53664481 53674983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04310 1 153 MADS-box Gene Family AT5G15800 44.025 1.04e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04310 K09264 - gmx:100797819 238.039