Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04309 ATGGGAAGAGGGAGAGTTGAATTAAAGAGAATAGAGAACAAAATTAACAGACAAGTTACTTTTGCAAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATAATTTTCTCCAACCGTGGAAAGCTCTATGAATTCAGCAGCACCTCCTGCATGATGAAAACATTGGAAAAATACCAAAAGTACAGCTACAGTGAACTGGAGGCCAGCCAACCAGCCAATACCACTCAGAATTACCAGGACTATGTGAGATTAAAAGCCAATGTAGAAATCTTACAACGTTCCCAAAGGAACCTTCTTGGGGAAGATATTGCACTAAAGAATACAAGTGAGCTCGAACAGCTTGAAAATCAATTGGAGGCAGCACTTAAGAATATAAGATCATCTAAGACTCAGTTCATGCTTGATCAACTTGCCGATCTTCACAATCGGGAAAAGGAGCTTGTTGAAACAAATAATGCTCTAAGAAGTAAGCTTGAAGAAACTGATCATAACTCACAAGTTCCAGGTAGATTGTTGGCGGTTGGTTCTGATTTCCATCATACACGCTTTCCTCCTCAATCAGAGGGGTTTTTCCACCATGTGGGAGTCAATTCCAACTTCCAATTTGGATACAATCCAATGGATTCTGATGATGTAAATGTTGGAGCTTCATCCATAAGTAAGAATGGATTCGCCTCTATGACATGGACGCTTTGA 732 0.3989 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYQKYSYSELEASQPANTTQNYQDYVRLKANVEILQRSQRNLLGEDIALKNTSELEQLENQLEAALKNIRSSKTQFMLDQLADLHNREKELVETNNALRSKLEETDHNSQVPGRLLAVGSDFHHTRFPPQSEGFFHHVGVNSNFQFGYNPMDSDDVNVGASSISKNGFASMTWTL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04309 243 Coils Coil 149 169 - -
Trre15g04309 243 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Trre15g04309 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre15g04309 243 Coils Coil 116 143 - -
Trre15g04309 243 FunFam MADS-box transcription factor 1 13 89 - -
Trre15g04309 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Trre15g04309 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre15g04309 243 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g04309 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre15g04309 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre15g04309 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g04309 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre15g04309 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g04309 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre15g04309 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Trre15g04309 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04309 Trre-Chr15 53661047 53674983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04309 1 215 MADS-box Gene Family AT5G15800 57.919 1.77e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre15g04309 K-box 4.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04309 K09264 - gmx:100797819 352.443