Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04308 ATGAACGGGTTAAGAGGTGAAAGAGCTCCTCTTTTGGAGGCTGAGCGCGGTTCTGGAAAGGGAAAGAGACAAGATGATTCCACAGCTGATCAAGTCACAGACCTTGAACATGGTGATGCAGTGCCGGCTGCACATGTTGGATTCTTTAGAGTGTTTTCACTTGCAAAGCCTGAGGCTGGAAAATTGGTCATTGCTACAATAGCTCTGTTAATTGCTGCCACATCAAGTACCTTAGTTCAAAAATTTGGTGGGAAGATAATTGATATTGTATCAGGAGATATAAGAACTCCTGAGGACAAAGATGCAGCATTAGATGCTGTCAAGAGCACCATACTAGAAATCCTTATCATCGTAATCCTCGGTTCAATTTGCTCAGCGCTTCGAGCATGGCTTTTTTATTCTGCTAGCGAAAGGGTTGTTGCACGCCTGAGGAAGGATTTGTTCAGTCATCTTGTAAACCAGGAAATAGCTTTCTTTGATGTTACACGAACCGGGGAGCTTTTAAGTAGGTTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCAGAGGCCTTGAGAAACTTGTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTACTGGCTTTGGTTGTTGTACCTGTTATTTCTGTCGGTGTCCGTAAATTCGGTCGTTTCCTGCGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCATTATCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACGGTTAGATCTTTTGCTCAGGAAGATTATGAAATAGAACGGTACTCCGAGAAAGTTAATGAGACTTTATCGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACGATCAAGGGTGCCATGACCTCGGGTGATCTTACATCTTTCATTCTGTATAGTCTCTCAGTTGGATCTTCTATATCTGGTTTGTCGGGATTGTATACTACAGTTATGAAAGCCGCCGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTGCCTCATCCATGCCTAAGGCGGGAGATAAATGTCCTCTGGGTGATCATGATGGGGAAGTGGAACTAAACGATGTATGGTTTTCTTATCCATCACGCCCTAATCATATGGTGCTCAAGGGTATTAATATAAAACTACAACCCGGCTCAAAGGTTGCTCTTGTCGGTCCAAGTGGTGGCGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGATCCAACCAAGGGAAAGATTCTGGTGAATGGTGTTCCTCTGGTAGAAATATCACACAAACATTTACACAAAAAGATCAGTATAGTGAGTCAGGAGCCCACACTCTTCAACTGTTCCATAAAGGAGAACATAGCCTATGGATTTGATGGCAAAATTGACGACGCTGATCTTGAAAATGCAGCTAAAATGGCCAACGCGCATGAATTTATATCAAATTTCCCAGAAAAATACGAGACCTTTGTTGGAGAGCGAGGCATAAGGCTTTCAGGAGGACAAAAACAGAGAATAGCAATTGCTAGAGCGTTACTTATGGACCCGAAAATTCTCTTACTTGATGAAGCCACTAGTGCTTTAGATGCTGAAAGCGAATACTTAGTGCAGGATGCTATGGATTCTATCATGAAGGGAAGAACAGTTTTAGTCATTGCTCATAGATTATCAACTGTGAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTCGAGAGTGGTACTCATGACGAGCTTCTTGACAAGAATGGTGTTTATACTGCATTAGTGAAGAGACAACTACAAACAACAAAAACTGAGATCTAA 1902 0.4122 MNGLRGERAPLLEAERGSGKGKRQDDSTADQVTDLEHGDAVPAAHVGFFRVFSLAKPEAGKLVIATIALLIAATSSTLVQKFGGKIIDIVSGDIRTPEDKDAALDAVKSTILEILIIVILGSICSALRAWLFYSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALVVVPVISVGVRKFGRFLRELSHKTQAAAALSSSIAEESFGAIRTVRSFAQEDYEIERYSEKVNETLSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMTSGDLTSFILYSLSVGSSISGLSGLYTTVMKAAGASRRVFQLLDRASSMPKAGDKCPLGDHDGEVELNDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILVNGVPLVEISHKHLHKKISIVSQEPTLFNCSIKENIAYGFDGKIDDADLENAAKMANAHEFISNFPEKYETFVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLDKNGVYTALVKRQLQTTKTEI 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04308 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 625 IPR027417 -
Trre15g04308 633 SMART AAA_5 414 608 IPR003593 GO:0016887
Trre15g04308 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 624 IPR003439 GO:0005524
Trre15g04308 633 MobiDBLite consensus disorder prediction 1 32 - -
Trre15g04308 633 FunFam ABC transporter B family member 25 114 384 - -
Trre15g04308 633 FunFam ABC transporter B family member 25 385 627 - -
Trre15g04308 633 Pfam ABC transporter transmembrane region 62 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g04308 633 PIRSF ABC_prm/ATPase_B 12 633 - -
Trre15g04308 633 Gene3D - 385 630 IPR027417 -
Trre15g04308 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 353 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g04308 633 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 45 630 IPR039421 -
Trre15g04308 633 MobiDBLite consensus disorder prediction 9 32 - -
Trre15g04308 633 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524|GO:0016887
Trre15g04308 633 CDD ABC_6TM_AtABCB27_like 65 361 - -
Trre15g04308 633 Gene3D ABC transporter type 1, transmembrane domain 116 384 IPR036640 GO:0005524|GO:0016020
Trre15g04308 633 CDD ABC_MTABC3_MDL1_MDL2 387 625 - -
Trre15g04308 633 SUPERFAMILY ABC transporter transmembrane region 50 367 IPR036640 GO:0005524|GO:0016020
Trre15g04308 633 Pfam ABC transporter 405 555 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04308 Trre-Chr15 53621579 53626108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04308 137 633 Calmodulin-binding Proteins AT2G36910 36.166 4.38e-93 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04308 - - var:108320153 1063.91