Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04300 ATGGCAAAATCCATCTCTCCAAACGCCATCTCCACCTTACTTTCAAATCCATCTCCTGATTCTTCATCGGATCTTCCTGAAATCGTTGTTCAAATTCTCGATCTCAAACAAAATGGCAACAGATACATGTGTTTTGTTAGTGATGGAAAGATGAAATTAAGAGCAATACTTCCTTCAAGTCAGTTTTCAGATGTACTTTCTGGAAAGATCCAGAACCTTGGTCTCATTCGCATTGTTGATTATACTCTCAACGATATTCCAAACAAGCCTGATAAGTATCTTATTGTTACAAAGTGTGAAGCGGTTTCTCCTGCGCTTGAAATGGAGATAAAGTGTGAACCAACTGGTATCACTTTGAAGCCAAAGGAAGATGCTGTAGTCAAGACTGAAGGTGCTGCTGGTATTGTTCTTACGCCGAAGCAGAATGTTGTTTCAAAATCTGCTGCTCAGATTGTGCGTGAGCAACATGCTAATTCTGCTCCTGCGAGACTTGCTATGACGCGTAGGGTGCGTCCTCTTGTTTCTTTGAATCCTTATATGGGTGGTTGGACAATCAAGGTCAGTGTTACCAGCAAAGGAACCATGCGTACCTATAAGAATGCTAGAGGAGAAGGCTGTGTATTCAATGTTGAATTGACTGATGAAGATGGTACTCAGATTCAAGCAACTATGTTTAATGATGCTGCAAGGAAGTTTTTTGACAAATTTGTTATGGGAAAGGTTTATTATATTTCAAAGGGTACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGGCTAATGATTATGAGATGACACTGAATGAGAATTCTGAGGTGGAAGAGGTTCCTGAGGAAGCTGGGTTTGTTCCGGAGACAAAATTCAATTTTGTCCCACTTGATCAATTGGGTCCTCATGTCAATAAGCCTGACCTTGTTGATGTTGTTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGTATTCGAAGAAAGAGCAACAATGAGAGTGTTGCAAAGCGTGACATTACTATTGCTGATGAATCAAAGAAGACAGTTGTTGTGTCTTTGTGGGGTGACCTTGCAACTAACATTGGACAAGAGTTACTGGACATTGCTGATAAATCCCCAGTAGTTGCAATCAAATCTCTCAAGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTTTAGTTCTGATTGATCCAGAAGTACCTGAAGCTCAGAAGCTCAGATCCTGGTATGATTCTGAAGGCAAGGATACTGCTATGGCTGCTTTAAGCTCTGGTTCTATTCCATCCAACAGTGGTAACAGATCTGTGTACTCTGACCGTGTTACACTTTCTCATATAACCTCTAACCCCTCCTTGGGAGCTGAGAAGCCTGCATTTTTTAGCATCAGAGGATACATAAGTTTCATAAAGGCAGATCAGGCAATGTGGTATCGTGCCTGTAAGACTTGCAATAAGAAAGTTACTGAAAGCACTGGTGCTGGGTACTGGTGTGAGAGTTGCCAGAAAAACGATGAAGAATGTAACTTAAGATATATCATGGTTGTAAAAGTTACTGATGCAAGTGGCGAGGCTTTTATATCAACCTTTAATGAAGAAGCTGAGAAGATCATTGGTTGCTCTGCTGATGAGCTAGATAGCCTTAGATCACAGGAGGGAGAAGATAGTCCTTATCAACTGAAATTGAAGCAAGCTACCTGGACTCCACACCTCTTGCGGGTTAGTGTTTCTCAGAATGAGTATAATAATGAGAAGCGGCAAAGGATTACTGCCCGGGCTGTTGTTCCTGTTGACTATGCTGTGGAGTCCAGAAATCTCCTTGAAAACATATCAAAGATGGGAGTCTGTCAATAA 1851 0.4095 MAKSISPNAISTLLSNPSPDSSSDLPEIVVQILDLKQNGNRYMCFVSDGKMKLRAILPSSQFSDVLSGKIQNLGLIRIVDYTLNDIPNKPDKYLIVTKCEAVSPALEMEIKCEPTGITLKPKEDAVVKTEGAAGIVLTPKQNVVSKSAAQIVREQHANSAPARLAMTRRVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVMGKVYYISKGTLKVANKQFKTVANDYEMTLNENSEVEEVPEEAGFVPETKFNFVPLDQLGPHVNKPDLVDVVGVVKNVSSTMSIRRKSNNESVAKRDITIADESKKTVVVSLWGDLATNIGQELLDIADKSPVVAIKSLKVGDFQGVSLSAISKSLVLIDPEVPEAQKLRSWYDSEGKDTAMAALSSGSIPSNSGNRSVYSDRVTLSHITSNPSLGAEKPAFFSIRGYISFIKADQAMWYRACKTCNKKVTESTGAGYWCESCQKNDEECNLRYIMVVKVTDASGEAFISTFNEEAEKIIGCSADELDSLRSQEGEDSPYQLKLKQATWTPHLLRVSVSQNEYNNEKRQRITARAVVPVDYAVESRNLLENISKMGVCQ 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04300 616 CDD RPA1_DBD_A 172 275 - -
Trre15g04300 616 Gene3D - 424 612 IPR012340 -
Trre15g04300 616 FunFam Replication protein A subunit 169 278 - -
Trre15g04300 616 Gene3D - 283 423 IPR012340 -
Trre15g04300 616 FunFam Replication protein A subunit 282 421 - -
Trre15g04300 616 Gene3D - 4 117 IPR012340 -
Trre15g04300 616 Pfam Replication factor-A C terminal domain 459 605 IPR013955 -
Trre15g04300 616 FunFam Replication protein A subunit 426 612 - -
Trre15g04300 616 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Trre15g04300 616 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre15g04300 616 SUPERFAMILY Nucleic acid-binding proteins 438 612 IPR012340 -
Trre15g04300 616 Gene3D - 169 278 IPR012340 -
Trre15g04300 616 CDD RPA1_DBD_B 312 411 - -
Trre15g04300 616 CDD RPA1_DBD_C 443 611 IPR047192 -
Trre15g04300 616 Pfam Replication protein A OB domain 300 396 IPR031657 -
Trre15g04300 616 SUPERFAMILY Nucleic acid-binding proteins 171 280 IPR012340 -
Trre15g04300 616 Pfam OB-fold nucleic acid binding domain 184 264 IPR004365 GO:0003676
Trre15g04300 616 SUPERFAMILY Nucleic acid-binding proteins 288 415 IPR012340 -
Trre15g04300 616 NCBIfam replication factor-a protein 1 (rpa1) 4 611 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g04300 616 FunFam Replication protein A subunit 4 114 - -
Trre15g04300 616 PANTHER REPLICATION FACTOR A 1, RFA1 183 575 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04300 Trre-Chr15 53536853 53539838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04300 1 616 Core DNA Replication Machinery Family AT5G08020 66.882 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04300 K07466 - qsu:112017680 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04300 15 53536853 53539838 Trre15g04300 15 53536853 53539838 ECH