Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04297 ATGGCTTTTTTTGGTAAACTTGGGAATATTCTAAGACAAACTGCTAACAGGAATATTGTTTCCGAATTGCGTTCGTCCCCATCTGCTTTCCAGGCTATAAGATGCATGTGTTCTGCTCCAAGCACAAAGCTGTTTGTAGGGGGCATTCCATTTTCAACCGATGAACAAGGTTTGAGGGAAGCTTTTTCAAGATATGGTGAAGTTCTTGACGCAAGGATAATCGTGGATCGTGAAACCGGTAGATCCAGAGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAGGCATCTAGTGCCATTCAGGCCTTGGATAGTCAGGAACTTCATGGTCGTCGGGTCAGAGTAAATTATGCTAATGAAAGGCCCCGTGGATATGGCGGCGGTGGCGGTTCTTATGGCAATGCATCATATGGTGGTGGAGGTGGTTCTTATGGCAATGCATCATATGGTGGTGGAGGTGGACATGTAGGCTCTCAATATGGTGGTGGAGGTGGGTATGCAGACTCTCAATATGGTGGTGCTTCAAGTGGCGGTGGCTATGGTGGAAATGTAGATGGAGGTTATGGGGGTGGTGGATATGGTGGAGGCAGCTATGGGCCAGGTGGTAATTATGGCGGTAGTGGTGCTGCCAATAACTATTCTGCTCCTAACAGTTTTGAAACTAACAATACTGGTGGGGGGTTTGAATATGGCAGCAGTGGCCAAGATATCACAGATGTTGGGGACCCGATCAGCAATGTAAACGAGGATATCACAGATGTTGGAGACCCGATCGAAGGAAATTATAGGGAAGACGGCGATGATACTGATAATTTTGCCAAAAGGGCCTGA 831 0.4669 MAFFGKLGNILRQTANRNIVSELRSSPSAFQAIRCMCSAPSTKLFVGGIPFSTDEQGLREAFSRYGEVLDARIIVDRETGRSRGFGFITFNSVEEASSAIQALDSQELHGRRVRVNYANERPRGYGGGGGSYGNASYGGGGGSYGNASYGGGGGHVGSQYGGGGGYADSQYGGASSGGGYGGNVDGGYGGGGYGGGSYGPGGNYGGSGAANNYSAPNSFETNNTGGGFEYGSSGQDITDVGDPISNVNEDITDVGDPIEGNYREDGDDTDNFAKRA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04297 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Trre15g04297 276 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 144 - -
Trre15g04297 276 PRINTS Eggshell protein signature 150 165 - -
Trre15g04297 276 PRINTS Eggshell protein signature 176 186 - -
Trre15g04297 276 PRINTS Eggshell protein signature 201 219 - -
Trre15g04297 276 PRINTS Eggshell protein signature 38 54 - -
Trre15g04297 276 SMART rrm1_1 43 116 IPR000504 GO:0003723
Trre15g04297 276 MobiDBLite consensus disorder prediction 256 276 - -
Trre15g04297 276 Gene3D - 12 138 IPR012677 -
Trre15g04297 276 SUPERFAMILY RNA-binding domain, RBD 39 151 IPR035979 GO:0003676
Trre15g04297 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Trre15g04297 276 MobiDBLite consensus disorder prediction 239 276 - -
Trre15g04297 276 CDD RRM2_NsCP33_like 43 118 - -
Trre15g04297 276 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04297 Trre-Chr15 53514078 53516127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04297 41 179 Eukaryotic Initiation Factors Gene Family AT4G34110 27.273 8.47e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04297 K12741 - gmx:100799124 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04297 15 53514078 53516127 Trre15g04297 15 53514078 53516127 ECH