Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04294 ATGGCATCGGCGAAACGATGCCATTACGAAGTTCTCGGTCTCTCTCGTGACTGCACACCGGACGAAATCCGATCATGTTACCGGAAACTCGCCCTCCAACGCCACCCAGACAAGCTCGTTAAATCAGGTCTCTCTCAATCCGAAGCCACCGCTCAATTTCAGGAGCTACAACACGCTTACGAGGTTCTCTCTGATCCAAAAGAACGCGCTTGGTACGATTCCCACCGTTCTCAAATCCTTTTCTCCGATCCAAATTCTCACTCTAATTCCGTTGTCCCTGACCTCTTCTCATTTTTCTCAAACACCGTCTTTTCCGGTTATTCTGATTCCGGTAAGGGTTTTTACAAGGTTTATTCCGATGTATTCGATAAAATTCAAGCGAATGAGATTAATTTTGCTAAGAAATTAGGTATAGGTATTGATTCTGTTAAACAAGCTCCTCTTATGGGGAATTTGGATAGTCCTTATGCTCAGGTTACGGCTTTTTATAGTTACTGGTTGGGATTTTCGACGGTTATGGATTTTTGTTGGGCGGATGAGTATGACGCGATGGCTGGTCCGAATAGGAAATCGCGGAGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCTAAGAGGGAGTATAATGATACTGTGAGGAGGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAAATGGAGAAGAAGAAAGAGGAGGAGAAAGAGAGGAAGAGGAAGTTGGAGATGGAGAAGAAGGAGAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGAAGAAGAGGTTGAGGATTTGTTTGAGGATGATGAGTTTGAGGAGAAGAAAGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGTCTAAGAAACATAAGGAGAAAGTTGCTGAGTTTAAGGATTCGCTTGACGATGAAGAGGAGTTAGAAGTTGAGGTGGATGAGGAAAGTGAAATTGAAAGAGAACGAGATGGAGAGGAGAGATTAGCAAGTGAGGAGGATGGAATTGGGGTTGATGATTTGGAGGAGAGGATTCGAGAGGGTCTTAATGTAGCAGAAGAGGATGCAAATGGGGTTGAATTGAATGATGATGGTGACGATGATGAATTTTTTGATGCGACACATGCAAAAGAGGGAGAGGAGGCTGGTGTATCAGTTGATTTTGATGTTAATGACGACAAAGATGGTGATGAAGACGGTGAAAATCATGTTCTTGAAACAACTGTGTTTGGGCACAAGGGTAGAGTTTATTTTGAGGAGAATGATGATGAAGGTGATGAAACCGATATTCTTGAAGCAATGTTGGCTGGGCGCAAGAGCAGAAAACATGGTGCTTCAATACACAAGCCCACGGCTTCTGTAACTCCAACTCAAATTGATAGTGAGAATGAGAATGATGGGATTGGTGCTATGGAATATAACAACCGAAAGTCCGCAAAAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTGGCAAAAATGGGGATGGATCTTATGTGCCTGACAATGGCAAATATGAGAATATGAACAATAATGGAAATGATGATCCTTATGCACAAGAGTCTAGTTCTCAAAATTTTGAGGAAAGTGGTGGTAAAGAAAATGAGCAGGTGGGTAGAGATAAGAAGATTTCAAATCAACCTGTTGATAAAAAAGGAACCTCAAAGGATACAAAGACCAAGGCAAAAATTCCATCCAAAGGAAAAAAAGCAAAGAATAATTCGAAGAATCTTGGCAATTTTTGTGAGACATGTGAAATGGAGTTTGAATCAAGGAATAAATTACATAAGCATCTGGGTGAGTCTGGGCATGCAGCAATTAAAGGTCGATAA 1911 0.4181 MASAKRCHYEVLGLSRDCTPDEIRSCYRKLALQRHPDKLVKSGLSQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSHSNSVVPDLFSFFSNTVFSGYSDSGKGFYKVYSDVFDKIQANEINFAKKLGIGIDSVKQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWADEYDAMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFVKKRDKRVIDMKVKKNLEMEKKKEEEKERKRKLEMEKKERAMAYEEPDWAKVDEEEVEDLFEDDEFEEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSLDDEEELEVEVDEESEIERERDGEERLASEEDGIGVDDLEERIREGLNVAEEDANGVELNDDGDDDEFFDATHAKEGEEAGVSVDFDVNDDKDGDEDGENHVLETTVFGHKGRVYFEENDDEGDETDILEAMLAGRKSRKHGASIHKPTASVTPTQIDSENENDGIGAMEYNNRKSAKKKRRAKKEKGGKNGDGSYVPDNGKYENMNNNGNDDPYAQESSSQNFEESGGKENEQVGRDKKISNQPVDKKGTSKDTKTKAKIPSKGKKAKNNSKNLGNFCETCEMEFESRNKLHKHLGESGHAAIKGR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04294 636 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Trre15g04294 636 MobiDBLite consensus disorder prediction 461 604 - -
Trre15g04294 636 ProSitePatterns Zinc finger C2H2 type domain signature. 608 630 IPR013087 -
Trre15g04294 636 PRINTS DnaJ domain signature 9 27 IPR001623 -
Trre15g04294 636 PRINTS DnaJ domain signature 27 42 IPR001623 -
Trre15g04294 636 PRINTS DnaJ domain signature 48 68 IPR001623 -
Trre15g04294 636 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Trre15g04294 636 MobiDBLite consensus disorder prediction 397 417 - -
Trre15g04294 636 SMART dnaj_3 6 68 IPR001623 -
Trre15g04294 636 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Trre15g04294 636 SMART c2h2final6 606 630 IPR013087 -
Trre15g04294 636 SMART c2h2final6 295 319 IPR013087 -
Trre15g04294 636 MobiDBLite consensus disorder prediction 559 590 - -
Trre15g04294 636 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 636 IPR044648 -
Trre15g04294 636 MobiDBLite consensus disorder prediction 349 380 - -
Trre15g04294 636 MobiDBLite consensus disorder prediction 310 329 - -
Trre15g04294 636 Pfam DnaJ domain 8 73 IPR001623 -
Trre15g04294 636 Coils Coil 229 259 - -
Trre15g04294 636 SUPERFAMILY Chaperone J-domain 4 105 IPR036869 -
Trre15g04294 636 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Trre15g04294 636 MobiDBLite consensus disorder prediction 330 348 - -
Trre15g04294 636 MobiDBLite consensus disorder prediction 310 429 - -
Trre15g04294 636 Gene3D DnaJ domain 1 91 IPR036869 -
Trre15g04294 636 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Trre15g04294 636 SUPERFAMILY beta-beta-alpha zinc fingers 287 337 IPR036236 -
Trre15g04294 636 MobiDBLite consensus disorder prediction 530 558 - -
Trre15g04294 636 Coils Coil 316 336 - -
Trre15g04294 636 MobiDBLite consensus disorder prediction 477 491 - -
Trre15g04294 636 CDD DnaJ 7 65 IPR001623 -
Trre15g04294 636 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Trre15g04294 636 Gene3D Classic Zinc Finger 284 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04294 Trre-Chr15 53496850 53499282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04294 3 636 C2H2 Transcription Factor Family AT1G74250 48.382 2.96e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g04294 DnaJ 9.7e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04294 K09506 - gmx:100788305 744.962