Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g04294 | ATGGCATCGGCGAAACGATGCCATTACGAAGTTCTCGGTCTCTCTCGTGACTGCACACCGGACGAAATCCGATCATGTTACCGGAAACTCGCCCTCCAACGCCACCCAGACAAGCTCGTTAAATCAGGTCTCTCTCAATCCGAAGCCACCGCTCAATTTCAGGAGCTACAACACGCTTACGAGGTTCTCTCTGATCCAAAAGAACGCGCTTGGTACGATTCCCACCGTTCTCAAATCCTTTTCTCCGATCCAAATTCTCACTCTAATTCCGTTGTCCCTGACCTCTTCTCATTTTTCTCAAACACCGTCTTTTCCGGTTATTCTGATTCCGGTAAGGGTTTTTACAAGGTTTATTCCGATGTATTCGATAAAATTCAAGCGAATGAGATTAATTTTGCTAAGAAATTAGGTATAGGTATTGATTCTGTTAAACAAGCTCCTCTTATGGGGAATTTGGATAGTCCTTATGCTCAGGTTACGGCTTTTTATAGTTACTGGTTGGGATTTTCGACGGTTATGGATTTTTGTTGGGCGGATGAGTATGACGCGATGGCTGGTCCGAATAGGAAATCGCGGAGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCTAAGAGGGAGTATAATGATACTGTGAGGAGGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAAATGGAGAAGAAGAAAGAGGAGGAGAAAGAGAGGAAGAGGAAGTTGGAGATGGAGAAGAAGGAGAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGAAGAAGAGGTTGAGGATTTGTTTGAGGATGATGAGTTTGAGGAGAAGAAAGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGTCTAAGAAACATAAGGAGAAAGTTGCTGAGTTTAAGGATTCGCTTGACGATGAAGAGGAGTTAGAAGTTGAGGTGGATGAGGAAAGTGAAATTGAAAGAGAACGAGATGGAGAGGAGAGATTAGCAAGTGAGGAGGATGGAATTGGGGTTGATGATTTGGAGGAGAGGATTCGAGAGGGTCTTAATGTAGCAGAAGAGGATGCAAATGGGGTTGAATTGAATGATGATGGTGACGATGATGAATTTTTTGATGCGACACATGCAAAAGAGGGAGAGGAGGCTGGTGTATCAGTTGATTTTGATGTTAATGACGACAAAGATGGTGATGAAGACGGTGAAAATCATGTTCTTGAAACAACTGTGTTTGGGCACAAGGGTAGAGTTTATTTTGAGGAGAATGATGATGAAGGTGATGAAACCGATATTCTTGAAGCAATGTTGGCTGGGCGCAAGAGCAGAAAACATGGTGCTTCAATACACAAGCCCACGGCTTCTGTAACTCCAACTCAAATTGATAGTGAGAATGAGAATGATGGGATTGGTGCTATGGAATATAACAACCGAAAGTCCGCAAAAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTGGCAAAAATGGGGATGGATCTTATGTGCCTGACAATGGCAAATATGAGAATATGAACAATAATGGAAATGATGATCCTTATGCACAAGAGTCTAGTTCTCAAAATTTTGAGGAAAGTGGTGGTAAAGAAAATGAGCAGGTGGGTAGAGATAAGAAGATTTCAAATCAACCTGTTGATAAAAAAGGAACCTCAAAGGATACAAAGACCAAGGCAAAAATTCCATCCAAAGGAAAAAAAGCAAAGAATAATTCGAAGAATCTTGGCAATTTTTGTGAGACATGTGAAATGGAGTTTGAATCAAGGAATAAATTACATAAGCATCTGGGTGAGTCTGGGCATGCAGCAATTAAAGGTCGATAA | 1911 | 0.4181 | MASAKRCHYEVLGLSRDCTPDEIRSCYRKLALQRHPDKLVKSGLSQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSHSNSVVPDLFSFFSNTVFSGYSDSGKGFYKVYSDVFDKIQANEINFAKKLGIGIDSVKQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWADEYDAMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFVKKRDKRVIDMKVKKNLEMEKKKEEEKERKRKLEMEKKERAMAYEEPDWAKVDEEEVEDLFEDDEFEEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSLDDEEELEVEVDEESEIERERDGEERLASEEDGIGVDDLEERIREGLNVAEEDANGVELNDDGDDDEFFDATHAKEGEEAGVSVDFDVNDDKDGDEDGENHVLETTVFGHKGRVYFEENDDEGDETDILEAMLAGRKSRKHGASIHKPTASVTPTQIDSENENDGIGAMEYNNRKSAKKKRRAKKEKGGKNGDGSYVPDNGKYENMNNNGNDDPYAQESSSQNFEESGGKENEQVGRDKKISNQPVDKKGTSKDTKTKAKIPSKGKKAKNNSKNLGNFCETCEMEFESRNKLHKHLGESGHAAIKGR | 636 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g04294 | 636 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 295 | 324 | IPR013087 | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 461 | 604 | - | - | |
Trre15g04294 | 636 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 608 | 630 | IPR013087 | - | |
Trre15g04294 | 636 | PRINTS | DnaJ domain signature | 9 | 27 | IPR001623 | - | |
Trre15g04294 | 636 | PRINTS | DnaJ domain signature | 27 | 42 | IPR001623 | - | |
Trre15g04294 | 636 | PRINTS | DnaJ domain signature | 48 | 68 | IPR001623 | - | |
Trre15g04294 | 636 | ProSiteProfiles | dnaJ domain profile. | 7 | 76 | IPR001623 | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 397 | 417 | - | - | |
Trre15g04294 | 636 | SMART | dnaj_3 | 6 | 68 | IPR001623 | - | |
Trre15g04294 | 636 | Pfam | Zinc-finger double-stranded RNA-binding | 295 | 320 | IPR022755 | - | |
Trre15g04294 | 636 | SMART | c2h2final6 | 606 | 630 | IPR013087 | - | |
Trre15g04294 | 636 | SMART | c2h2final6 | 295 | 319 | IPR013087 | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 559 | 590 | - | - | |
Trre15g04294 | 636 | PANTHER | DNAJ PROTEIN JJJ1 HOMOLOG | 2 | 636 | IPR044648 | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 349 | 380 | - | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 310 | 329 | - | - | |
Trre15g04294 | 636 | Pfam | DnaJ domain | 8 | 73 | IPR001623 | - | |
Trre15g04294 | 636 | Coils | Coil | 229 | 259 | - | - | |
Trre15g04294 | 636 | SUPERFAMILY | Chaperone J-domain | 4 | 105 | IPR036869 | - | |
Trre15g04294 | 636 | ProSitePatterns | Nt-dnaJ domain signature. | 53 | 72 | IPR018253 | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 330 | 348 | - | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 310 | 429 | - | - | |
Trre15g04294 | 636 | Gene3D | DnaJ domain | 1 | 91 | IPR036869 | - | |
Trre15g04294 | 636 | SMART | ZnF_U1_5 | 292 | 326 | IPR003604 | GO:0003676|GO:0008270 | |
Trre15g04294 | 636 | SUPERFAMILY | beta-beta-alpha zinc fingers | 287 | 337 | IPR036236 | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 530 | 558 | - | - | |
Trre15g04294 | 636 | Coils | Coil | 316 | 336 | - | - | |
Trre15g04294 | 636 | MobiDBLite | consensus disorder prediction | 477 | 491 | - | - | |
Trre15g04294 | 636 | CDD | DnaJ | 7 | 65 | IPR001623 | - | |
Trre15g04294 | 636 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 297 | 319 | IPR013087 | - | |
Trre15g04294 | 636 | Gene3D | Classic Zinc Finger | 284 | 342 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g04294 | Trre-Chr15 | 53496850 | 53499282 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g04294 | 3 | 636 | C2H2 Transcription Factor Family | AT1G74250 | 48.382 | 2.96e-174 | 508 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre15g04294 | DnaJ | 9.7e-22 | CL0392 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g04294 | K09506 | - | gmx:100788305 | 744.962 |