Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04274 ATGGAATCCTATCTATTATATACTACCCTACCCTACTCCTTTCTATTGTATCCCTTCACTTTGAACTTAGAACATTCAGGTTATAAATTGCAACTAAAGAAAATGGTAAAGAAGATCTGTGGAATTGGAGCTGGATATGTAGGAGGTCCAACTATGGCTGTTATAGCCCTCAAATGTCCTTCAATTGAAGTAGCTGTTGTCGACATTTCTCACTCTCGCATATCAGCTTGGAATAGCGACAAGCTCCCTATCTATGAGCCTGGCCTAGAACAAGTTATACAACAATGTAGAGGAAAGAATCTCCACTTCAGCACTGACGTAGAAAAGCATGTTTATGAAGCTGATATAATCTTCGTTAATGTTAACACACCAACAAAAACGAGTGGTCTTGGAGCTGGCAAAGCCGCAGATTTAACGTATTGGGAAAGTGCAGCTCGAGTGATAGCTGATGTTTCAAGATCAGACAAAATTGTTGTTGAGAAATCAACTGTTCCAGTTAGAACAGCTGAAGTAATCGAAAAGATTCTAGTCCACAATAGCAATGGCAAGATCAAATATCAAATTTTATCAAATCCCGAATTTCTTTCCGAAGGAACTGCTATGCAGGATCTTCTAAACCCTGATAGGGTTCTACTTGGAGGAAATGATAGTCCTGGAGGTCAAGAAGCAATTCAAAAACTGAAAGATATATATGCTCATTGGGTGCCTGAAGACAGAATCATAACTACCAATCTTTGGTCTGCTGAACTCTCAAAGTTAGCTGATAATGCTTTTTTGGCACAAAGGATTTCATCTATCAATGCCATGTCGGCGTTATGTGAGGCTACCGGAGCTGATGTTTCACAGGTTTCTTGTGTTTTAAGCAAGAACACGAAGCTCGGTTCTAAATACTTAAATGCTAGCGTTGGTTTTGGCGGCTCTTGTTTTCAAAAAGATATACTTAACTTGGTTTATATTTGTGAGAGTAATGGACTTTTTGAAGTGGCTAATTATTGGAAAGAAGTAGTTAAGGTGAATGATTACCAAAAGAGTAGGTTTGTGAAAAAAGTTATAACATCTATGTTCAATACAGTTTCAGGTAAGAAGATCGCTGTTCTAGGATTTTCCTTTAAGAAAGATACTAGTGATACTAGGAAAACTCCTGCAATCGATGTTTGTAAAGGTCTTTTGGCGGATAATGCTTTTTTGAGCATTTACGATCCACGTGTTAGTGAAGAACAGATCCGAAGAGATTTGTCTACGAATGAGAGTCATTGGGATCATTCAATTCAGGCGAAGTCAATGAGTTTCCCTAGCGCGAAGCAGGTTAGTGTTTTTGAGAATGTTTATGAGGCTACTAAAGATGCTCATGGGATATGTGTTCTAACAGAATGGGATGAGTTTAAGACAGTTGATTATCATAAAGTGTTTGATAGTATGGAGAAACCGGCATTTGTTTTCGATGGTAGAAATGTTTTGGATGTTGATAAGTTGAGGGAGATTGGATTTATTGCATACTCAATTGGGAAGCCATTGAACCAGTGGGTGGATTGCTAG 1536 0.3835 MESYLLYTTLPYSFLLYPFTLNLEHSGYKLQLKKMVKKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSDKLPIYEPGLEQVIQQCRGKNLHFSTDVEKHVYEADIIFVNVNTPTKTSGLGAGKAADLTYWESAARVIADVSRSDKIVVEKSTVPVRTAEVIEKILVHNSNGKIKYQILSNPEFLSEGTAMQDLLNPDRVLLGGNDSPGGQEAIQKLKDIYAHWVPEDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCEATGADVSQVSCVLSKNTKLGSKYLNASVGFGGSCFQKDILNLVYICESNGLFEVANYWKEVVKVNDYQKSRFVKKVITSMFNTVSGKKIAVLGFSFKKDTSDTRKTPAIDVCKGLLADNAFLSIYDPRVSEEQIRRDLSTNESHWDHSIQAKSMSFPSAKQVSVFENVYEATKDAHGICVLTEWDEFKTVDYHKVFDSMEKPAFVFDGRNVLDVDKLREIGFIAYSIGKPLNQWVDC 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04274 511 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 246 345 IPR008927 -
Trre15g04274 511 Gene3D - 29 244 - -
Trre15g04274 511 PIRSF UDPglc_DH_euk 31 511 IPR028356 GO:0003979
Trre15g04274 511 Gene3D - 245 276 - -
Trre15g04274 511 FunFam UDP-glucose 6-dehydrogenase 277 511 - -
Trre15g04274 511 FunFam UDP-glucose 6-dehydrogenase 245 276 - -
Trre15g04274 511 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 246 340 IPR014026 GO:0016616|GO:0051287
Trre15g04274 511 Gene3D - 277 511 - -
Trre15g04274 511 NCBIfam nucleotide sugar dehydrogenase 38 484 IPR017476 GO:0016616
Trre15g04274 511 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 250 IPR036291 -
Trre15g04274 511 SMART UDPG_MGDP_dh_C_a_2_a 364 488 IPR014027 GO:0016616|GO:0051287
Trre15g04274 511 FunFam UDP-glucose 6-dehydrogenase 35 244 - -
Trre15g04274 511 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 364 487 IPR014027 GO:0016616|GO:0051287
Trre15g04274 511 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 37 507 IPR028356 GO:0003979
Trre15g04274 511 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 38 220 IPR001732 GO:0016616|GO:0051287
Trre15g04274 511 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 349 499 IPR036220 -
Trre15g04274 511 PIRSF UDPglc_GDPman_dh 37 503 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04274 Trre-Chr15 53366168 53370749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04274 K00012 - gmx:100781197 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00274 13 2192294 2193736 Trre15g04274 15 53366168 53370749 ECH
Trre15g04274 15 53366168 53370749 Trre15g04274 15 53366168 53370749 ECH