Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04273 ATGGAAGAAAAATATCAAATTCAAGAATTGAAACATGCTTGCAAATACTGTAACAAAAGTTTCCCTTGTGGTAGATCTTTAGGTGGTCACATGAGGTCTCATATAAACAACTTATCATCTGAAAAAACAGAACTGAAACAAAAAGTTTCAATCAAAATCAACAATGGAAGTTGCATTGATCATTCTGAAGCTACTGCTTATGGTTTAAGAGAGAATCCAAAGAAGACATGGAGAAAAAGAGTTGCTGAGTCAAGTGAAGAAGATAGTTATGTGTATGATAAATTCTGCAAAGAGTGTGGAAAATGTTTTCAATCATGGAAAGCTTTGTTTGGTCATATGAAGTGTCATTCTGATCAGAAAGAAAGAGTTTCTGATAGTTTGGAAGATCAAGATTCATGGACTAATAATGCTAAAGATGTTCAATCTGATAATGAAATCACTGCTCCAAGAAGAAAAAGAAGATCAAAGAGAACAAGAACAAGGTATAATAACATGGTAGGTTCTTCTACTGCTGCAACTGCAACAACTTCTTCTTCTGTTTCTGAAGTTGAACATGAACAAGAAGAAGTTGCTATAAGCTTGATTATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTCTTGCTGAATCATCTGATAATAATTCTGTTTACTTCGAAGCTCGATCTTCTGTTCGAACTAATCTTGTTACTAAATTCGATGCGAAAAACAAGAATTCTACTACTACTGCTGCTGCTGCGGCTGCGGCTGCTACTATCAATATTGCAAAGTTGATGAAGCAAAATGAGAATAAGAAGTGTGAGTTAGGAAAATCTGTTTCCAAGAAATTGAACTTCAAAGGAAAAAGTTTAGAGATATTGGATACTGAAAAAGGATTCAAGATGAACAAAAGTGGAGTTTCCATTAAAGGGTTTCTGAAAGCCACAAAATCTGAGCTTGATTATGTGTCTACATTGGAAGAATCAGAAGTTGAAAATGGGAAAAGTAGAGTGAATGGAACAGAATCAGCTATGAACATGTCTCATGATGAAGAAGATGAATTCATCAAGAATTTTCATAAGAGAGGGAAATTTGAGTGTACTACTTGTAACAAAATTTTCCATTCATATCAAGCTCTTGGAGGACATAGAGCTAGTCATAAAAAGACTAAAGGGTGTTTTGCTTCAAAGATTGAGATTAGTGAAAACAGCATTGAATTTGTTGAAACTGATCTATCTCATGAAAGCAAGGTCATGAAGATTAGTGATAATAACATTGAATATGTTCAAAATATGAAGATCAAAGGTCATCATGAATGTCCAATTTGCTTTAAGGTTTTTCAATCTGGTCAAGCTTTAGGTGGACATAAAAGATCTCATATGGTTGCTGCTACTGGTTCTGAGAGTAGAGTTATAGTTCAAGTTCAAGAACAAGTTCCACAGATTAGGGACTTTCTTGATCTTAATCTACCTGCTTCTACTGAGGAAGAAAGTAATAGTCATGCTGATTCTAATAGACCTTGGTGGATTGTTGAAGGTAATCAACAAGAGGCACTTGTAGGGTAG 1542 0.3476 MEEKYQIQELKHACKYCNKSFPCGRSLGGHMRSHINNLSSEKTELKQKVSIKINNGSCIDHSEATAYGLRENPKKTWRKRVAESSEEDSYVYDKFCKECGKCFQSWKALFGHMKCHSDQKERVSDSLEDQDSWTNNAKDVQSDNEITAPRRKRRSKRTRTRYNNMVGSSTAATATTSSSVSEVEHEQEEVAISLIMLSRDVSPWSGLAESSDNNSVYFEARSSVRTNLVTKFDAKNKNSTTTAAAAAAAATINIAKLMKQNENKKCELGKSVSKKLNFKGKSLEILDTEKGFKMNKSGVSIKGFLKATKSELDYVSTLEESEVENGKSRVNGTESAMNMSHDEEDEFIKNFHKRGKFECTTCNKIFHSYQALGGHRASHKKTKGCFASKIEISENSIEFVETDLSHESKVMKISDNNIEYVQNMKIKGHHECPICFKVFQSGQALGGHKRSHMVAATGSESRVIVQVQEQVPQIRDFLDLNLPASTEEESNSHADSNRPWWIVEGNQQEALVG 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04273 513 ProSitePatterns Zinc finger C2H2 type domain signature. 359 379 IPR013087 -
Trre15g04273 513 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Trre15g04273 513 ProSitePatterns Zinc finger C2H2 type domain signature. 432 452 IPR013087 -
Trre15g04273 513 SUPERFAMILY beta-beta-alpha zinc fingers 95 379 IPR036236 -
Trre15g04273 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Trre15g04273 513 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Trre15g04273 513 Gene3D Classic Zinc Finger 9 116 - -
Trre15g04273 513 MobiDBLite consensus disorder prediction 129 143 - -
Trre15g04273 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 357 384 IPR013087 -
Trre15g04273 513 Coils Coil 247 267 - -
Trre15g04273 513 Pfam C2H2-type zinc finger 357 381 - -
Trre15g04273 513 Pfam C2H2-type zinc finger 429 453 - -
Trre15g04273 513 Pfam C2H2-type zinc finger 96 118 - -
Trre15g04273 513 Pfam C2H2-type zinc finger 12 34 - -
Trre15g04273 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Trre15g04273 513 Gene3D Classic Zinc Finger 354 452 - -
Trre15g04273 513 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 501 - -
Trre15g04273 513 MobiDBLite consensus disorder prediction 126 183 - -
Trre15g04273 513 SUPERFAMILY beta-beta-alpha zinc fingers 9 37 IPR036236 -
Trre15g04273 513 SMART c2h2final6 94 116 IPR013087 -
Trre15g04273 513 SMART c2h2final6 357 379 IPR013087 -
Trre15g04273 513 SMART c2h2final6 12 34 IPR013087 -
Trre15g04273 513 SMART c2h2final6 430 452 IPR013087 -
Trre15g04273 513 MobiDBLite consensus disorder prediction 161 181 - -
Trre15g04273 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 430 452 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04273 Trre-Chr15 53352796 53354337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04273 341 492 C2H2 Transcription Factor Family AT2G45120 48.387 8.27e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g04273 zf-C2H2_6 4.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04273 - - tpra:123887209 872.463