Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04258 ATGTCAGACTTGCAGGAAACACATTCTTGTTGCTTCCTATTTTTGCTCTCAATTTCCTTCATCCTTCTTTCAGGTAGTGTAGTTGTTGGAGATTCTTTGGACAAAGACAAACAAATTCTGTTGAAGTTGAAAAACTACCTAGACAACAAAACTCTTGCAGACCAAGGAAAGTACATATATTGGAACACTAATACTTCAAATTCCAATCCATGTCAATGGCAAGGAATTTTGTGTAACAAAGCAAAGAGAGTAATTGGGATAGATCTATCTAACAGTGACATCACAGGAGAGATATTTCAAAGCTTCTCTCAGCTCACCGAGCTGACACACCTCGATCTCTCGCAGAATACGCTCTTTGGATGTATTCCGGATGACTTGAGGAACTGTCAGAAGCTATTGCATCTCAATCTCTCTCATAATATTCTTGTTGGAGAATTGAATGTAACTGGATTAACAACCTTGCAGACACTTGATTTGTCCTTGAATAGATTTCATGGAGAATTTGGTTTGTTGAATTTCCCTTCCATTTGTGGAAATTTGGTCACTTTGAATATCTCAGGTAATAACTTAACTGGTGAGATTGGTAATAGTTTTGATCAATGTTCAAATTTGAAGTATTTGGATTTGAGCACCAACAAGTTGAGTGGAGGTATATGGAATGGATTTGCAAGGCTTACACAATTTTCTGTTGCTGAGAATCATCTCAATGGAAACATTTCATTTGAAGCTTTTCCATTGAATTGTGAGCTTGTTGAATTAGACCTTTCTCAAAATGGATTTGTCGGTGAGGCACCAAAGGAAGTTGCTAACTGTAAGAATCTAACCATGTTGAATCTTTCAAGCAACAATTTTACCGGTGCTATCCCTAGTGAAATCGGGTCCATTTCGAGGCTTAAAGGATTGTACTTGGGAGGAAACAACTTTTCAAGAGATATTCCTGAGACCCTTTTGAATTTGACTAATTTGGTTTTCTTGGATTTGAGCAGAAACAAATTTGGTGGTGACATACAAATGATATTTGGAAAGTTTAAGCAGGTCAGATTTCTTCTGTTGCACTCTAATTCTTACACTGGAGGGTTAAGATCATCTGGAATTTTTACATTGCTGAATATTACGCGGTTAGACCTAAGCTACAACAACTTTTCAGGTCCATTACCTGTTGAAATCTCTCATATGCAAAGTCTAAAACTTCTAATGTTATCATATAACCAATTCAATGGATCTATTCCATCAGAATTTGGAAATATGCATAATTTGCAAGCACTTGACCTTGCTTTCAACAGGTTGAGTGGATCAATACCTCCGAGCCTCGGAAACTTGAGTTCACTCTTGTGGTTGATGCTTGCAGACAATTCATTAACCGGATCAATTCCTCCCGAGTTAGGGAACTGTACTAGTTTGTTATGGCTAAACCTCGCTCACAATAACCTCTCCGGAAAGTTTCCTCGTGAACTTTCTAAAATTGGAAGGAATGCAATGACAACATTTGAATCAAATAGGCGAGACGATGTAATTGTTGCTGGTTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCAGATTACCCTCCGTTCAGTTTTGTGTATGATATCTTAACAAGAAAAAATTGTAGAGATCTTTGGAATAAATTGCTAAAAGGGTATGGAATTTTTCCATTTTGCACACCTGGTTCCTCCCTTAGGTTACCTATGATATCTGGTTATGTTCAGTTAAGTGGAAACAAGCTAAGTGGCGAAATCCCTTCGGAGATCGGAACAATGGTGAATTTCAGTATGTTGCAGTTGGGATTCAACAGTTTCTCTGGTAAATTCCCACCAGAGTTGGGAAATATTCCCCTTATGGTCTTGAACATGACTAGAAACAACTTTTCAGGTGAAATTCCTATCGAAATTGGAAACTTGAAATGCTTACAAAATCTTGATTTGTCTTGCAACAATTTCTCTGGGAATTTTCCAACAAGTTTGAACAAAGTGTCTGAGCTTAACAAGTTCAACATCTCTTACAATCCCTTCATATATGGTGCAGTCTCATCAAGTGGACAATTTGGTACTTTTGATAAAGACTCATATTTAGGTGACCCTCTTTTGATTCTTCCAAAGTTCATTGATAATAGTAGCACCAGAAACAATGAAAACATGACCTCTCACCACAAACACCATAAAAAGCATTCAAATTTGTCTGTGTTTTTGGCTTTTCTAGCCATAACACTTGTTTTCATTATATGTGGTCTTCTAACAATAATAGTTTGTGCATTAGTTAAAAGTCCATCAGATCAATATCTTTTGAGGGATCATATAAAACATTGCAATGATTCAAGCAGCTCAGGAATAGGATCCTCGCAATGTTTATCTGATTCGGTTAAAGTCATTCGTTTAAACAAAACAGCTTTCACCTATGCAGACATTTTGAAAGCAACAAACAATTTCTCAGAGAACAGAATCATAGGAAAAGGTGGATTTGGAACAGTATACATAGGAGTTTTCACAGATGGTAGAGAAGTAGCAGTGAAGAAGCTCTTAAGTGAAGGACTCGATGGCGAAAAGGAATTTCAAGCTGAAATGGAAGTTCTAAGCGGTCACGGTTTCGGTTGGCCTCATCCGAATCTCGTCACACTCTATGGTTGGTGTCTAAACAATTCAGAAAAGATACTTGTTTATGAGTACATAGAAGGTGGAAGCTTAGAGGATCTAATAACCGATACAGCACGTTTGACATGGAAAAAGAGGCTACAAGTTGCTATCGACGTGGCTCGCGCGCTTGTCTATTTACACCATGAATGCAATCCTTCTATTGTTCATAGAGATGTGAAGGCTAGTAATGTGATGCTAGACAAAGAAGGGAAAGCAAAAGTAACAGATTTTGGATTAGCTAGAATTGTTAATGTCGGCGATAGCCATGTGAGTACAATGGTTGCTGGAACTGTTGGATATGTTGCACCTGAATATGGACAAACAATGAAAGCTACTACAAAAGGCGATGTTTATAGTTATGGTGTGTTGGCTATGGAGTTGGCTACAGGTAGAAAAGCAGTGGATGGAGGTGAAGAGTGTTTGGTTGAATGGACAAGGCGTGTCATAGGAAGAAAACAACAACATCAACAACATCATGTGTTGAGTCATTTGGGTTCAAGACTTGTTGGTGGAGCAGAAGAAATGGGTGAATTGCTATGTATTGGTTTGAAGTGTACAAATGAGGAACCAAATGCTAGGCCAAATATGAAACAAGTTTTGGCTATGCTTATTTTGATATCCAAATCCAATATTGGAGATTCAAGTGATCATGGACACATTGTTTAG 3300 0.3782 MSDLQETHSCCFLFLLSISFILLSGSVVVGDSLDKDKQILLKLKNYLDNKTLADQGKYIYWNTNTSNSNPCQWQGILCNKAKRVIGIDLSNSDITGEIFQSFSQLTELTHLDLSQNTLFGCIPDDLRNCQKLLHLNLSHNILVGELNVTGLTTLQTLDLSLNRFHGEFGLLNFPSICGNLVTLNISGNNLTGEIGNSFDQCSNLKYLDLSTNKLSGGIWNGFARLTQFSVAENHLNGNISFEAFPLNCELVELDLSQNGFVGEAPKEVANCKNLTMLNLSSNNFTGAIPSEIGSISRLKGLYLGGNNFSRDIPETLLNLTNLVFLDLSRNKFGGDIQMIFGKFKQVRFLLLHSNSYTGGLRSSGIFTLLNITRLDLSYNNFSGPLPVEISHMQSLKLLMLSYNQFNGSIPSEFGNMHNLQALDLAFNRLSGSIPPSLGNLSSLLWLMLADNSLTGSIPPELGNCTSLLWLNLAHNNLSGKFPRELSKIGRNAMTTFESNRRDDVIVAGSGECLAMKRWIPADYPPFSFVYDILTRKNCRDLWNKLLKGYGIFPFCTPGSSLRLPMISGYVQLSGNKLSGEIPSEIGTMVNFSMLQLGFNSFSGKFPPELGNIPLMVLNMTRNNFSGEIPIEIGNLKCLQNLDLSCNNFSGNFPTSLNKVSELNKFNISYNPFIYGAVSSSGQFGTFDKDSYLGDPLLILPKFIDNSSTRNNENMTSHHKHHKKHSNLSVFLAFLAITLVFIICGLLTIIVCALVKSPSDQYLLRDHIKHCNDSSSSGIGSSQCLSDSVKVIRLNKTAFTYADILKATNNFSENRIIGKGGFGTVYIGVFTDGREVAVKKLLSEGLDGEKEFQAEMEVLSGHGFGWPHPNLVTLYGWCLNNSEKILVYEYIEGGSLEDLITDTARLTWKKRLQVAIDVARALVYLHHECNPSIVHRDVKASNVMLDKEGKAKVTDFGLARIVNVGDSHVSTMVAGTVGYVAPEYGQTMKATTKGDVYSYGVLAMELATGRKAVDGGEECLVEWTRRVIGRKQQHQQHHVLSHLGSRLVGGAEEMGELLCIGLKCTNEEPNARPNMKQVLAMLILISKSNIGDSSDHGHIV 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04258 1099 SMART serkin_6 810 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04258 1099 CDD STKc_IRAK 816 1084 - -
Trre15g04258 1099 Gene3D Ribonuclease Inhibitor 32 173 IPR032675 -
Trre15g04258 1099 FunFam Putative LRR receptor-like serine/threonine-protein kinase 343 504 - -
Trre15g04258 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Trre15g04258 1099 FunFam Leucine-rich repeat receptor protein kinase MSP1 773 889 - -
Trre15g04258 1099 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Trre15g04258 1099 Gene3D Ribonuclease Inhibitor 562 715 IPR032675 -
Trre15g04258 1099 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 242 336 - -
Trre15g04258 1099 SUPERFAMILY L domain-like 95 483 - -
Trre15g04258 1099 Pfam Protein kinase domain 811 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04258 1099 Gene3D Transferase(Phosphotransferase) domain 1 890 1095 - -
Trre15g04258 1099 Gene3D Ribonuclease Inhibitor 174 243 IPR032675 -
Trre15g04258 1099 Gene3D Ribonuclease Inhibitor 244 318 IPR032675 -
Trre15g04258 1099 Gene3D Phosphorylase Kinase; domain 1 774 889 - -
Trre15g04258 1099 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 177 1081 - -
Trre15g04258 1099 SUPERFAMILY L domain-like 569 676 - -
Trre15g04258 1099 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Trre15g04258 1099 Pfam Leucine rich repeat 179 226 IPR001611 GO:0005515
Trre15g04258 1099 Pfam Leucine rich repeat 370 429 IPR001611 GO:0005515
Trre15g04258 1099 Gene3D Ribonuclease Inhibitor 327 501 IPR032675 -
Trre15g04258 1099 SMART LRR_typ_2 392 415 IPR003591 -
Trre15g04258 1099 SMART LRR_typ_2 105 129 IPR003591 -
Trre15g04258 1099 SMART LRR_typ_2 416 439 IPR003591 -
Trre15g04258 1099 SMART LRR_typ_2 295 319 IPR003591 -
Trre15g04258 1099 SMART LRR_typ_2 440 464 IPR003591 -
Trre15g04258 1099 Pfam Leucine rich repeat N-terminal domain 34 79 IPR013210 -
Trre15g04258 1099 ProSiteProfiles Protein kinase domain profile. 810 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04258 1099 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 890 1089 - -
Trre15g04258 1099 SUPERFAMILY Protein kinase-like (PK-like) 792 1083 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04258 Trre-Chr15 53240205 53243647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04258 71 1081 Receptor kinase-like Gene Family AT1G55610 32.889 4.04e-149 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Trre15g04258 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04258 - - gmx:100816573 1577.38