Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04252 ATGGGTTGTGTGTTTGTGAAGCAAGGGGTGTCTGTGACACCTGCCATTGACCACTCAGTTGACTCTGAGAGGAATAATAGTATTAAGAAGAAGAATAAGAAGAGTACTGAGTCGTTTGGAGTGACTTGGAGTGAGGTAGGTGAGTCTGGTAGAACGAGTTTGAATGGTGAAACTGGGTCTTTGAGTTTCAGGTTAGGGAATCTCAGTAAGTATGTTGAGGGAGAACAAGCTGCTGCCGGTTGGCCGGCTTGGATCACCTCTGTCGCCGCCGAAGCCATTCATGGTTGGGTTCCTCTCCGTTCTGATGCATTTGAAAAACTTGATAAGATTGGGCAGGGTACATATAGCAGTGTTTTTCGAGCGAAGGAGATTGAGACGGGGAAGATAGTGGCTCTAAAGAAGGTTAGATTTGACAATTTTGAGCCAGAAAGTGTTAGGTTTATGGCGCGAGAAATATTGATTCTTAGAAGGCTTGATCATCCCAATATCATTAAACTGGAAGGGTTGATTACTTCAAGATTGTCTTGTAGCATCTACCTTGTATTTGAGTACATGGAGCATGATGTAACAGGGCTCTTGTCAAAACCAGAAATCAACTTTACTGAATCACAGATCAAATGCTACATGAAACAGTTGTTTTCTGGTCTAGAGCACTGTCACTCGAGAGGTATAATGCACCGGGACATTAAAGGATCCAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTAGCAGATTTTGGATTGGCGAATTTCTGTAATTACGGGAGCAAGCAGCCGTTAACTAGCCGCGTTGTCACATTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCATCTGTGGATCTTTGGAGTGTTGGTTGTGTCTTTGCAGAGTTACTAGTTGGGAAACCTATACTTAAGGGAAGAACAGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCTCCGCCCGACGAATACTGGAAAAAGACCAGACTTCCACATGCAACTTTATTCAAGCCACAACAACCATATGATAGTTGCCTAAGAGAAACATTTAAAGATTTCCCTGCAACCTGTGTAAATCTGTTACAAACTCTTCTTTCTGTTGAACCAAACAAACGCGGAACTGCTTCATCTGCTCTATCGTCCGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTACCAGTATACCCACCTAGCAAAGAAATCGATGCAAAACACGAGGAGGAGACAAAAAGGAAAAAAATTGGCGGGAGAGTTGGTGCACCTGAATCAAGAAGACCATCAAGAAAGCCAGCAAGACCGAATAAATTACCCCTAGCACCGGATTTGAATAGTCAAATTCAAACTAGACAAAAGATGGATGATAGATCAATCAACATCCTTAAAGAAGAGAACACTAACATATGTGATGAGGCATCAAAGCCATCCAATGGTAAAGCAGAAGATGCTTCTCATATGAAGAATGCATCTCAAACAGATGTTCCCTTTCATGGACCATTACAAGTTTCAAAATCAAGTGGATTTGCATGGGCAAAAAGGCGTAAAGATGACACTACTTCAATTAGATCCCACACTCGATCTATTTCTAAAGGACATATATTTAATTCATTAGAAACTTCTACAATAAATTCAAGGGATGTTTCTGATGATAATAGAAACAATGAAAATAAGGAAGTTTTTGGCGAACGCACCAGTTCAAGAGGCCGTGATCTATTTGAAATTTCTAAGCTAGTAATGCAAAATCAATGGAGTAAGTTTGATCGCCCGGATTCCTTTGATACTTCTGAAGAGTACCACTCACAAGAACTGTCTATGATGGTTTATCATAGAGAAGATTCACTGTCCAGGAGAAGTAACCGGAGTTATCAGGATCAAGGAGAGAAAGTTGAATTTTCAGGGCCTCTAATATCTCAAATGCATACAGTTGATGAGCTCTTAGAAAGACATGAGCGCCACATTCGGCATACAGTCCGAAGATCATGGTTTCAGAGAGGTAAAAAGTGTGGGAATTAA 2034 0.409 MGCVFVKQGVSVTPAIDHSVDSERNNSIKKKNKKSTESFGVTWSEVGESGRTSLNGETGSLSFRLGNLSKYVEGEQAAAGWPAWITSVAAEAIHGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDVTGLLSKPEINFTESQIKCYMKQLFSGLEHCHSRGIMHRDIKGSNLLVNNEGILKVADFGLANFCNYGSKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFPATCVNLLQTLLSVEPNKRGTASSALSSEYFKTKPYACDPSSLPVYPPSKEIDAKHEEETKRKKIGGRVGAPESRRPSRKPARPNKLPLAPDLNSQIQTRQKMDDRSINILKEENTNICDEASKPSNGKAEDASHMKNASQTDVPFHGPLQVSKSSGFAWAKRRKDDTTSIRSHTRSISKGHIFNSLETSTINSRDVSDDNRNNENKEVFGERTSSRGRDLFEISKLVMQNQWSKFDRPDSFDTSEEYHSQELSMMVYHREDSLSRRSNRSYQDQGEKVEFSGPLISQMHTVDELLERHERHIRHTVRRSWFQRGKKCGN 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04252 677 PANTHER CELL DIVISION PROTEIN KINASE 102 392 - -
Trre15g04252 677 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04252 677 MobiDBLite consensus disorder prediction 399 460 - -
Trre15g04252 677 SUPERFAMILY Protein kinase-like (PK-like) 98 395 IPR011009 -
Trre15g04252 677 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04252 677 MobiDBLite consensus disorder prediction 555 572 - -
Trre15g04252 677 MobiDBLite consensus disorder prediction 407 437 - -
Trre15g04252 677 CDD STKc_CDK9_like 104 388 - -
Trre15g04252 677 FunFam probable serine/threonine-protein kinase At1g54610 91 186 - -
Trre15g04252 677 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Trre15g04252 677 Gene3D Transferase(Phosphotransferase) domain 1 187 427 - -
Trre15g04252 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Trre15g04252 677 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04252 677 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Trre15g04252 677 FunFam probable serine/threonine-protein kinase At1g54610 187 426 - -
Trre15g04252 677 MobiDBLite consensus disorder prediction 550 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04252 Trre-Chr15 53173169 53176823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04252 96 422 Core Cell Cycle Gene Families AT5G10270 50.427 1.06e-112 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre15g04252 Pkinase 1.2e-69 CL0016