LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g04248	ATGGAAAAAAAGAATAAAGATCTTGTTAATATTATGATGAAACATTCATATAATTTCTTCTTTCATTTCGTTCTTTTCGTTTTCTTTTTTGTCCCGTCTAGATCTATTTCCGTCACTGACTATAATTCTTTCGCACCTTCGGTTAATTATCTTATTGATTGTGGCTCCCCCGTTAAAACTCAGCTAAACGATGGTAGAAACTTCAAATCTGATCGCGAAACTACTTCTCTCCTTTCAACGACCGAAGATATTATACTTTCGGTAGATTCCATAAACATAACAAATATATTTCCTCCTTCTTCATTGCCTTTATATCAAACTGCTAGAGCTTTCACAGATGAATCTATATACACTTTCTACATGTCCAAAACCGGTCGAATTTGGATTCGTCTTTATTTCTTCCCTTTTCCTAACCCTTCATATAATCTAACAAGTTCTATTTTCTCTGTTCATACTGATCATTTTGTTCTCTTGCATGAATTCTCTCCTACTAATAACAATTCATTTTATTTCAAAGAATATCTTGTTAATGTTCCTGACACTAGATTTTCACTCAAGTTCAAACCAAACAAAGATTCATTAGCATTCATCAATGCAATTGAAATTGTTTCAGCTCCTGATACACTTATATCAGATTCAGCAACTCAAGTTTTTCCACTTGGAGAATTCAAAGGTTTGATGAATTCAGCTTTGCAAGTATCTTATAGAATAAATGTAGGTGGCATCACCATAGCTCCTGAGGATGATACCTTATCAAGAACATGGGAGACTGATGGTTCCTATAACATTTTTCCACAAGGATCTATGAGTTTTTCTGTCTCAAATAGAAGCATAAAGTATCCAGAACATGTTACACCTTTGATAGCTCCAAATTCAGTTTATGCAAGTTGTGTACAAATGAAAGACCCTAAAGTTATGCAATCAAATTTCAATCTTAGTTGGATGGTGAATGTTGAAAAAAGATACTCTTATTTGATAAGAATGCATTTTTGTGACATTGTTAGTAAAAGTCTTAATCAATTGTATTTCAATGTATACATTAATGGGTTTGAAGGTGTGCATGCTTTGGATCTTTCATCTCAAACAAAAGCTCTATCAACAGCTTTTTACAAGGATTTTGTGATTGGTTCATCTAATATCACAAATGGTTCTATCTTGATTCAAGTAGGTCCACCTAATCTTCAACTAAGTACAACCAATGCAATTTTGAATGGAATTGAGGTTATGAAAATGAGCAATAGTGCTGATAGTTTGGATGGTTTTTTCTCTGTTGATGGAGAATACATAGGACCAAATTTAACATCTAAGGTAATGAAAATTGTTGCTATTGTTGGTTTGGTTTTGGCTGTGATAGCATTGTTGTTACTAGCAATAATGTATATTAGGTGGTTAAGGAGACCTTTAGATTGGGAAGAATGTAGAAGTTTATCTTCATGGATTCTTCCTCTTCATTCAATATGTAACAAAAGTTGCAAAACAAATTCAAACACAACTGATTCACCTAAGAGTAAGAATGGTGGTCATCATTCTCCAAGAGGGCCAGAAAAGTTCTTCCATTTTGTCGAATTACAACGAGCTACTAATAACTTTGATGAAAAGAGAGTTATTGGTGTTGGAGGATTTGGTAAAGTGTACCTTGGAACATTGGAAGATGGAACAGATGTTGCTATAAAAAGAGGAACTGGTGGTTCAGGACAAGGAATGAATGAGTTTATAACAGAACTAAACATGCTTTCTAAGATGCGACATCGCCATTTAGTTTCACTAATAGGTTTCTGTGATGAAAATTCAGAGATGGTTCTTGTATATGATTACATGTCTAATGGCCCTTTTCGTTCGCACCTTTATGGCTCCAACATTTCTCCTTTGTCTTGGCAAAAAAGGCTCGAGATATGTATCGGTGCTGCTCGCGGTTTGCATTATCTCCATACAGGTGCATCTCAAAGTATCATACACCGCGATGTGAAGACGACAAATATACTATTGGATGAGAATTATGTAGCTAAGGTTTCTGATTTTGGTTTATCTAAAGCTATCCAAGATAAATCTCAAGTGAGCACTGCTGTTAAGGGAAGTTTTGGATATCTTGATCCTGAATATTTCAGAAGCCAACAACTAACACAAAAATCTGATATATACTCATTTGGTGTAGTCCTATTTGAGGTATTGTGTGCTAGGCCAGTTGTTTGTCCTACATTGCCTATGGAACAAGCTAACTTGGCTGATTGGGTACTACAACAACATAGAATAGGAATGCTTCATAAGATGATTGATAAAAATATAGTTGATACTATAAATCATGAATCATACAAGATTTTTTCACAAATTGGTGTGAAATGTTTAGCAGATCATGGTGTTGATAGGCCTAGTATGGGTGATGTTTTGTGGCATTTGGAACATGCTTTGCAACTACAGATAGCTTCATCACATGTTGATATTGCAAATGCTTTTCAACATGAAAATGAATATGAAAGAAATGATGATAACTCACATGGTGTTACAAGTGATGAGTCTAATAGCACAAATTCTAGTTCTGTTTTGTTTTCTCAGATAGTTAATCTTCAAGGAAGGTGA	2574	0.3442	MEKKNKDLVNIMMKHSYNFFFHFVLFVFFFVPSRSISVTDYNSFAPSVNYLIDCGSPVKTQLNDGRNFKSDRETTSLLSTTEDIILSVDSINITNIFPPSSLPLYQTARAFTDESIYTFYMSKTGRIWIRLYFFPFPNPSYNLTSSIFSVHTDHFVLLHEFSPTNNNSFYFKEYLVNVPDTRFSLKFKPNKDSLAFINAIEIVSAPDTLISDSATQVFPLGEFKGLMNSALQVSYRINVGGITIAPEDDTLSRTWETDGSYNIFPQGSMSFSVSNRSIKYPEHVTPLIAPNSVYASCVQMKDPKVMQSNFNLSWMVNVEKRYSYLIRMHFCDIVSKSLNQLYFNVYINGFEGVHALDLSSQTKALSTAFYKDFVIGSSNITNGSILIQVGPPNLQLSTTNAILNGIEVMKMSNSADSLDGFFSVDGEYIGPNLTSKVMKIVAIVGLVLAVIALLLLAIMYIRWLRRPLDWEECRSLSSWILPLHSICNKSCKTNSNTTDSPKSKNGGHHSPRGPEKFFHFVELQRATNNFDEKRVIGVGGFGKVYLGTLEDGTDVAIKRGTGGSGQGMNEFITELNMLSKMRHRHLVSLIGFCDENSEMVLVYDYMSNGPFRSHLYGSNISPLSWQKRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENYVAKVSDFGLSKAIQDKSQVSTAVKGSFGYLDPEYFRSQQLTQKSDIYSFGVVLFEVLCARPVVCPTLPMEQANLADWVLQQHRIGMLHKMIDKNIVDTINHESYKIFSQIGVKCLADHGVDRPSMGDVLWHLEHALQLQIASSHVDIANAFQHENEYERNDDNSHGVTSDESNSTNSSSVLFSQIVNLQGR	857

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g04248	857	FunFam	Receptor-like protein kinase FERONIA	230	413	-	-
	Trre15g04248	857	ProSitePatterns	Protein kinases ATP-binding region signature.	536	558	IPR017441	GO:0005524
	Trre15g04248	857	FunFam	Receptor-like protein kinase FERONIA	606	820	-	-
	Trre15g04248	857	SUPERFAMILY	Protein kinase-like (PK-like)	506	799	IPR011009	-
	Trre15g04248	857	Gene3D	Phosphorylase Kinase; domain 1	491	605	-	-
	Trre15g04248	857	MobiDBLite	consensus disorder prediction	492	511	-	-
	Trre15g04248	857	CDD	STKc_IRAK	536	799	-	-
	Trre15g04248	857	PANTHER	OS07G0166700 PROTEIN	517	805	IPR045272	GO:0004714\|GO:0006468
	Trre15g04248	857	FunFam	receptor-like protein kinase FERONIA	491	605	-	-
	Trre15g04248	857	MobiDBLite	consensus disorder prediction	824	843	-	-
	Trre15g04248	857	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	650	662	IPR008271	GO:0004672\|GO:0006468
	Trre15g04248	857	Gene3D	Transferase(Phosphotransferase) domain 1	606	823	-	-
	Trre15g04248	857	Pfam	Malectin-like domain	52	411	IPR024788	-
	Trre15g04248	857	FunFam	Putative receptor-like protein kinase	49	206	-	-
	Trre15g04248	857	SMART	serkin_6	530	770	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04248	857	Pfam	Protein tyrosine and serine/threonine kinase	533	750	IPR001245	GO:0004672\|GO:0006468
	Trre15g04248	857	ProSiteProfiles	Protein kinase domain profile.	530	803	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04248	857	Gene3D	-	230	413	-	-
	Trre15g04248	857	Gene3D	-	45	206	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g04248	Trre-Chr15	53128667	53131320	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g04248	38	814	Receptor kinase-like Gene Family	AT5G61350	59.148	0.0	925

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Trre15g04248		Malectin_like	2.5e-35	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g04248	-		-	gmx:100814982	1118.99