Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04242 ATGGAGATTGAGGAACTTATTGATTTGAATAGCAAAGAGAGTAATTGTGGTGGAAATAATAGCAAGAACGGTGATGGATTCATTGATAGGAGTAAAGTTAGGATTTTGCTTTGTGATAATGATTCCAAGAGTTCAGAAGAGGTTTTTACTCTTCTTTTGAATTGCTCTTATCAGGTTACATCCGTAAAATCAGCAAGGCAAGTTATTGATGCATTGAATGCGGAAGGGCAATATATAGATATCATACTCGCTGAAGTTGACCTTCCAACTAAAAAGGGCATGAAGATGTTGAAATACATAGCACGGGATAAAGAACTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTATCAATTGTTGTTAAGTGCTTAAGACTCGGAGCAGCAGATTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACACACATGTGGAGACGGAGACGGATGCTTGGACTTACAGAGAACAACATCTGTAGTTATGATTTTGATATAGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGCCTGTAGTTTCAATTCAACAAGAACAAGAGGCCAGTAGTGCCACTGCTGCTGCTGTTATTGAGGAGCTTCCATATGCTCGTGCATCAGAATATCAGCCTGATGTACCCGGAATTAGTGATCGGAGAACAGGATATTTTTCATCAGGTCCGAAGAAGAGTGAACTAAGAATTGGAGAGTCATCAGCCTTTCTCACTTATGTCAAAGCAACAACAAAGAATAGCAACTTTGAAGAGACTGCTCATGTCGACAATAATGGTACTTCACAAGTGAGGGTGGAAGATATGATGAATCAAGCATGTTCTCAACAAGGGGGTAATGACCTTATAAGACATGAAAATGGAGAAACGATTGAAAGCCATTCACAAGACGACTTACCTAGAAGCAATAGTATCCCCGATTCTTTTTCTGTTGACAGATCATGTACCCCACCTGCATCAGTGGAGGTTTCACAGCAAAATAATTACAAGGAAGAACATCCACAGGGGGTGGTTCATCCAAGAAACGGAAGTTATGGTGGTTCTCAGCTCGACCAATCAGGCATGCATGCCCAACAAGCTTATCCATATTATACACCAGGAGGTTTTAATCATGTTATGATGTCATCATCAGCACAAATGTATCAAAAGAATATTCAGGACATTCAGAGTCATGTTAGTTCATCTATGATTTCCCAGTACAATCACCTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCGTTCCCGTATTTTCCAATGAGTATTTGTTTACAAACTGGTCAGGTTTCCACAGGCCATTCATGGCCATCATTAGGAAGTTCAACTTCGTGTGAAGCAAACTTAAAAAGAGTTGATAGGAGAGAAGCAGCCTTAATGAAGTTTAGACAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTGAGAAAGTTGAACGGTATTAATGTGGATCTAAATGGACAACCTGCTTCCACTGACTATGATAATGATGATGAGGAGGAGGAAAGCAATGGCATGAGAGATTCCTCTCCTAAGGATACTTGA 1692 0.4048 MEIEELIDLNSKESNCGGNNSKNGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPTKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLTENNICSYDFDIVASDPSDANTNSTTLFSDDTDDRSKRSTNPEPVVSIQQEQEASSATAAAVIEELPYARASEYQPDVPGISDRRTGYFSSGPKKSELRIGESSAFLTYVKATTKNSNFEETAHVDNNGTSQVRVEDMMNQACSQQGGNDLIRHENGETIESHSQDDLPRSNSIPDSFSVDRSCTPPASVEVSQQNNYKEEHPQGVVHPRNGSYGGSQLDQSGMHAQQAYPYYTPGGFNHVMMSSSAQMYQKNIQDIQSHVSSSMISQYNHLPQCPPHATGMTPFPYFPMSICLQTGQVSTGHSWPSLGSSTSCEANLKRVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDNDDEEEESNGMRDSSPKDT 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04242 563 SUPERFAMILY CheY-like 29 158 IPR011006 -
Trre15g04242 563 SMART REC_2 33 148 IPR001789 GO:0000160
Trre15g04242 563 MobiDBLite consensus disorder prediction 326 361 - -
Trre15g04242 563 MobiDBLite consensus disorder prediction 181 217 - -
Trre15g04242 563 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 240 IPR045279 GO:0009736
Trre15g04242 563 MobiDBLite consensus disorder prediction 533 563 - -
Trre15g04242 563 MobiDBLite consensus disorder prediction 201 217 - -
Trre15g04242 563 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Trre15g04242 563 Gene3D - 33 234 - -
Trre15g04242 563 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Trre15g04242 563 MobiDBLite consensus disorder prediction 320 377 - -
Trre15g04242 563 Pfam CCT motif 484 526 IPR010402 GO:0005515
Trre15g04242 563 ProSiteProfiles CCT domain profile. 484 526 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04242 Trre-Chr15 53073982 53077992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04242 22 562 Response Regulator Gene Family AT5G61380 50.633 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre15g04242 Response_reg 1.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04242 K12127 - gmx:100786522 883.634