Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04240 ATGGAGATTGAGGAACTTATTGATTTGAATAGCAAAGAGAGTAATTGTGGTGGAAATAATAGCAAGAACGGTGATGGATTCATTGATAGGAGTAAAGTTAGGATTTTGCTTTGTGATAATGATTCCAAGAGTTCAGAAGAGGTTTTTACTCTTCTTTTGAATTGCTCTTATCAGGTTACATCCGTAAAATCAGCAAGGCAAGTTATTGATGCATTGAATGCGGAAGGGCAATATATAGATATCATACTCGCTGAAGTTGACCTTCCAACTAAAAAGGGCATGAAGATGTTGAAATACATAGCACGGGATAAAGAACTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTATCAATTGTTGTTAAGTGCTTAAGACTCGGAGCAGCAGATTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACACACATGTGGAGACGGAGACGGATGCTTGGACTTACAGAGAACAACATCTGTAGTTATGATTTTGATATAGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGCCTGTAGTTTCAATTCAACAAGAACAAGAGGCCAGTAGTGCCACTGCTGCTGCTGTTATTGAGGAGCTTCCATATGCTCGTGCATCAGAATATCAGCCTGATGTACCCGGAATTAGTGATCGGAGAACAGGTTCTTTAGGACAACATCCGCCATGCAACAGAGTTACAGATGGTAGCTTTGATGGATATTTTTCATCAGGTCCGAAGAAGAGTGAACTAAGAATTGGAGAGTCATCAGCCTTTCTCACTTATGTCAAAGCAACAACAAAGAATAGCAACTTTGAAGAGACTGCTCATGTCGACAATAATGGTACTTCACAAGTGAGGGTGGAAGATATGATGAATCAAGCATGTTCTCAACAAGGGGGTAATGACCTTATAAGACATGAAAATGGAGAAACGATTGAAAGCCATTCACAAGACGACTTACCTAGAAGCAATAGTATCCCCGATTCTTTTTCTGTTGACAGATCATGTACCCCACCTGCATCAGTGGAGGTTTCACAGCAAAATAATTACAAGGAAGAACATCCACAGGGGGTGGTTCATCCAAGAAACGGAAGTTATGGTGGTTCTCAGCTCGACCAATCAGGCATGCATGCCCAACAAGCTTATCCATATTATACACCAGGAGGTTTTAATCATGTTATGATGTCATCATCAGCACAAATGTATCAAAAGAATATTCAGGACATTCAGAGTCATGTTAGTTCATCTATGATTTCCCAGTACAATCACCTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCGTTCCCGTATTTTCCAATGAGTATTTGTTTACAAACTGGTCAGGTTTCCACAGGCCATTCATGGCCATCATTAGGAAGTTCAACTTCGTGTGAAGCAAACTTAAAAAGAGTTGATAGGAGAGAAGCAGCCTTAATGAAGTTTAGACAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTGAGAAAGTTGAACGGTATTAATGTGGATCTAAATGGACAACCTGCTTCCACTGACTATGATAATGATGATGAGGAGGAGGAAAGCAATGGCATGAGAGATTCCTCTCCTAAGGATACTTGA 1746 0.4061 MEIEELIDLNSKESNCGGNNSKNGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPTKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLTENNICSYDFDIVASDPSDANTNSTTLFSDDTDDRSKRSTNPEPVVSIQQEQEASSATAAAVIEELPYARASEYQPDVPGISDRRTGSLGQHPPCNRVTDGSFDGYFSSGPKKSELRIGESSAFLTYVKATTKNSNFEETAHVDNNGTSQVRVEDMMNQACSQQGGNDLIRHENGETIESHSQDDLPRSNSIPDSFSVDRSCTPPASVEVSQQNNYKEEHPQGVVHPRNGSYGGSQLDQSGMHAQQAYPYYTPGGFNHVMMSSSAQMYQKNIQDIQSHVSSSMISQYNHLPQCPPHATGMTPFPYFPMSICLQTGQVSTGHSWPSLGSSTSCEANLKRVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDNDDEEEESNGMRDSSPKDT 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04240 581 ProSiteProfiles CCT domain profile. 502 544 IPR010402 GO:0005515
Trre15g04240 581 SUPERFAMILY CheY-like 29 158 IPR011006 -
Trre15g04240 581 MobiDBLite consensus disorder prediction 338 393 - -
Trre15g04240 581 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 305 IPR045279 GO:0009736
Trre15g04240 581 SMART REC_2 33 148 IPR001789 GO:0000160
Trre15g04240 581 MobiDBLite consensus disorder prediction 181 217 - -
Trre15g04240 581 MobiDBLite consensus disorder prediction 201 217 - -
Trre15g04240 581 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Trre15g04240 581 Gene3D - 33 234 - -
Trre15g04240 581 Pfam CCT motif 502 544 IPR010402 GO:0005515
Trre15g04240 581 MobiDBLite consensus disorder prediction 344 379 - -
Trre15g04240 581 MobiDBLite consensus disorder prediction 551 581 - -
Trre15g04240 581 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Trre15g04240 581 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04240 Trre-Chr15 53073982 53077992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04240 22 580 Response Regulator Gene Family AT5G61380 51.094 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre15g04240 Response_reg 1.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04240 K12127 - gmx:100786522 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04240 15 53073982 53077992 Trre15g04240 15 53073982 53077992 ECH