Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04234 ATGGAAACTGGACGAAACGAAAGACCCTTTTTGGGTTTTCGTTTTGTCTCCAAATTTTTAATATGCGCCATTTCTGGAACTCTCACTGCATCTTTTGCCCTTGCGGGGGCCCTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTTTCCGGGGAGTTTCATTGGGTGCCATTGCGGGGGCTATACTCTCCGTTGAGGTATTGGAAGCTTCTCGTGCATATTGGTGTATGGAGCAAACCGGTTCACGTGGTGCATCATCTATGGCAGATTTCATAGAAGAACTTGTTCGTGGAAGGCTTGTAGAAGAATCACTAACACCTGCTATTTTAACCACATACAATTTGCAATTTGAACAGGTTGGAATTGCTAATAACACTGGCTATGATGAGATTCATGATGTTCATAGCTTAGTAGCATCCAGAGGACTGTCAGGGGATTCATTGAATAAGCTACCGCACCATATGATATTGAAGGACATGAAGGCAGAGGATACTTTCTGCGCAATATGTTTGCAGGATATTGAAGTAGGTGAAATCGCAAGAAGCTTACCTCGTTGCGATCATACATTTCACTTGATATGCGTGGACAAGTGGCTTGTCAAGAACGATTCGTGTCCTATTTGCAGACAGAATGTGTAG 657 0.4384 METGRNERPFLGFRFVSKFLICAISGTLTASFALAGALTGAIAGALAAKATKSGFFRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTTYNLQFEQVGIANNTGYDEIHDVHSLVASRGLSGDSLNKLPHHMILKDMKAEDTFCAICLQDIEVGEIARSLPRCDHTFHLICVDKWLVKNDSCPICRQNV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04234 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 218 IPR013083 -
Trre15g04234 218 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Trre15g04234 218 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 217 IPR044523 -
Trre15g04234 218 Pfam Ring finger domain 173 215 IPR001841 -
Trre15g04234 218 SUPERFAMILY RING/U-box 154 218 - -
Trre15g04234 218 SMART ring_2 173 214 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04234 Trre-Chr15 53002716 53005086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04234 16 218 C3H Transcription Factor Family AT1G74410 55.882 8.40e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04234 - - gmx:100800105 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04234 15 53002716 53005086 Trre15g04234 15 53002716 53005086 ECH