Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04233 ATGGAAACTGGACGAAACGAAAGACCCTTTTTGGGTTTTCGTTTTGTCTCCAAATTTTTAATATGCGCCATTTCTGGAACTCTCACTGCATCTTTTGCCCTTGCGGGGGCCCTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTTTCCGGGGAGTTTCATTGGGTGCCATTGCGGGGGCTATACTCTCCGTTGAGGTATTGGAAGCTTCTCGTGCATATTGGTGTATGGAGCAAACCGGTTCACGTGGTGCATCATCTATGGCAGATTTCATAGAAGAACTTGTTCGTGGAAGGCTTGTAGAAGAATCACTAACACCTGCTATTTTAACCACATACAATTTGCAAGTTGGAATTGCTAATAACACTGGCTATGATGAGATTCATGATGTTCATAGCTTAGTAGCATCCAGAGGACTGTCAGGGGATTCATTGAATAAGCTACCGCACCATATGATATTGAAGGACATGAAGGCAGAGGATACTTTCTGCGCAATATGTTTGCAGGATATTGAAGTAGGTGAAATCGCAAGAAGCTTACCTCGTTGCGATCATACATTTCACTTGATATGCGTGGACAAGTGGCTTGTCAAGAACGATTCGTGTCCTATTTGCAGACAGAATGTGTAG 648 0.4398 METGRNERPFLGFRFVSKFLICAISGTLTASFALAGALTGAIAGALAAKATKSGFFRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTTYNLQVGIANNTGYDEIHDVHSLVASRGLSGDSLNKLPHHMILKDMKAEDTFCAICLQDIEVGEIARSLPRCDHTFHLICVDKWLVKNDSCPICRQNV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04233 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 215 IPR013083 -
Trre15g04233 215 SUPERFAMILY RING/U-box 151 215 - -
Trre15g04233 215 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 214 IPR044523 -
Trre15g04233 215 SMART ring_2 170 211 IPR001841 -
Trre15g04233 215 Pfam Ring finger domain 170 212 IPR001841 -
Trre15g04233 215 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04233 Trre-Chr15 53002716 53005086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04233 16 215 C3H Transcription Factor Family AT1G74410 57.214 7.94e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04233 - - gmx:100800105 340.117