Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04225 ATGGGGAGAGTTAAACTGAAGATAAAGAAATTGGAGAGCACAAGCAACCGACATGTGACTTATTCAAAACGGAAAAGTGGAATCTTAAAGAAAGCAAAGGAATTATCAATTCTATGTGATATTGATATTCTCCTTCTCATGTTTTCTCCCACAGAAAAACCTACCTTATTACAGGGAGAGCGCAGCAATATGGAGGAGATCATTTCAAAGTTTGCCCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCACTGAAAAAGACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCCAAACAATGGAGGAATTAAGTCATCAAGTGAGAGTCTTACAAGCTCAACTCGCAGAAATACAACAGAGACTGAGCTATTGGAGTAATCTAGAGAAGATCAATAACTTGGAGCATCTTAGACAAATGGAAGACTCGCTCAGGGAATCAATCAATCGACTATGTATACAAAAGGAGAATTTAAGAAAGCGACAACTAATGTCACTTGATTGTGCTAACCAGTTACCCGAAGGGATGACTTTACCTTTGATGATGGCTGGTCTACAAGAATCTCAACCTTTGTCTTGGCTCCTAAGTGGTGATAATCACCAGTTGATGTTACCTAATGAACCAAAATTTATGCCATTTAGTGATAATGGCAATAGAGATGTTGAGTGCTCCACTGACATTTCACTCCCGGGCTATTCTGGATATATTGGGAATGGCAAACTTGAGGTTGGAAGCTCTCCTCATGTCAATACTTTGGGTCAGGGAGGTAGTTCTTTGAACGAGTTAAATGGAAATCCAAATCCTTACTTAAATGTACAACCGTGTGATCAATTTGCATACCCTCCTCCGCAAGATCTCGAGGAAGTGAAACTTCACCAAACAATGAATAGTAAATCAAATACCATGGATTACCAAGTTAATAACAACTATGAACTTCCAAGATCATTATTTGAAAATGAACATCAGCAGTTCTGGAATTCTACAAATGGCTCTTGTGGGATTGCTATGTATAATGAGAATGGTTACCATAGGTAA 1071 0.3838 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTEKPTLLQGERSNMEEIISKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSQTMEELSHQVRVLQAQLAEIQQRLSYWSNLEKINNLEHLRQMEDSLRESINRLCIQKENLRKRQLMSLDCANQLPEGMTLPLMMAGLQESQPLSWLLSGDNHQLMLPNEPKFMPFSDNGNRDVECSTDISLPGYSGYIGNGKLEVGSSPHVNTLGQGGSSLNELNGNPNPYLNVQPCDQFAYPPPQDLEEVKLHQTMNSKSNTMDYQVNNNYELPRSLFENEHQQFWNSTNGSCGIAMYNENGYHR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04225 356 Coils Coil 77 97 - -
Trre15g04225 356 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Trre15g04225 356 Coils Coil 113 133 - -
Trre15g04225 356 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
Trre15g04225 356 Coils Coil 153 173 - -
Trre15g04225 356 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre15g04225 356 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Trre15g04225 356 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre15g04225 356 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre15g04225 356 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g04225 356 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre15g04225 356 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Trre15g04225 356 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre15g04225 356 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04225 Trre-Chr15 52874634 52877550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04225 1 275 Type I MADS-box Gene Family AT2G03060 50.877 1.02e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre15g04225 SRF-TF 4.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04225 - - pvu:PHAVU_003G189100g 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04225 15 52874634 52877550 Trre15g04225 15 52874634 52877550 ECH