Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04216 ATGGAGGCTATGGGTGGGAGTTCTAATTATCATGATAACCATGAAAATCTATTTTCAATTGCATGCCACCAATTTTCTCACAGTGGACAATATTTCGCAATGAATTTCTCCAAGGACGAATACCTCGTTCCTCCTTCGGATTTTGATAACATTTTTCGCCCTTTAGATGAATCTCTCTCTATTGAACCAACACCAAAATTGCAACTGCAAGACATTGATTTTGATTTTGTGAACGAAGGATTTTTGGGCTTGAATGAAATGATTGATTCTTTGTTTCATTCAGAAAAAGAACAGTTATGCTGCACTGATGAACTTAAGAAGGAGGCTATGGAGTTTAAGCCTGAAGTGGAAGAGAGAATTAGTTGTACTAGTTTTAATACAAAGACTTTATCAAGGAATACCATATCTCAGTATTTTTATATGCCAATATGTCAAGCTGCTAAAGAACTTAATGTTGGCCTCACATATTTGAAAAAAAGGTGTAGGGAATTGGGTATTCGTAGGTGGCCCCACAGGAAACTCAATAGCCTTCAAACCTTGATTAATAATGTTCAGGAAATGGGAAAGGATGAGGGGCCATTAAGTGATGAATTGAGGAATGAAATAGAGATGTTGGAAAAGGAAAAGAAACTTGTAGAAGAGATGCCGGATATTGAATTGAAACCTCGTACAAAAAGGCTTAGACAGAGATGTTTTAAGGACAACTACAAGAAGAGAAAACTTAGCTAG 729 0.3649 MEAMGGSSNYHDNHENLFSIACHQFSHSGQYFAMNFSKDEYLVPPSDFDNIFRPLDESLSIEPTPKLQLQDIDFDFVNEGFLGLNEMIDSLFHSEKEQLCCTDELKKEAMEFKPEVEERISCTSFNTKTLSRNTISQYFYMPICQAAKELNVGLTYLKKRCRELGIRRWPHRKLNSLQTLINNVQEMGKDEGPLSDELRNEIEMLEKEKKLVEEMPDIELKPRTKRLRQRCFKDNYKKRKLS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04216 242 Coils Coil 195 215 - -
Trre15g04216 242 ProSiteProfiles RWP-RK domain profile. 113 198 IPR003035 -
Trre15g04216 242 PANTHER PROTEIN RKD4 124 241 IPR044607 GO:0003700
Trre15g04216 242 Pfam RWP-RK domain 130 177 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04216 Trre-Chr15 52819304 52820350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04216 127 242 AtRKD Transcription Factor Family AT1G18790 64.957 1.30e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre15g04216 RWP-RK 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04216 - - gmx:100810700 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04216 15 52819304 52820350 Trre15g04216 15 52819304 52820350 ECH
Trre15g04216 15 52819304 52820350 Trre5g01685 5 12214656 12216139 PCT