Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04196 ATGGAGGGAGGAGATGATCTCCACCACCATCATCACCACCACCATCAGCATCTCCACCATCAACAGCAGCAGAGACAAAACTTCCCATTTCAACTTCTTGAAAAAAAAGAAGATAATCAAGAAGCAGCATCATGTTCAACTTCATCACCATACACATCTTTAGCAATCACACCAATCTCACCAACAGAACCAAGTACATCAAACTCAAACCGATCCAACCAACTAGTATCAGCAGCTTCAGCACCAACAACCTCGGACCCAGGAAACAAAAAACCACCACCAAAAAGAACTTCCACCAAAGACCGTCATACAAAAGTAGAAGGCCGTGGCCGCCGTATAAGAATGCCGGCACTCTGTGCGGCTCGAGTTTTTCAACTAACACGAGAATTAGGCCATAAATCAGACGGTGAAACCATTGAATGGCTCCTCCAACAAGCTGAACCAGCTGTTATAGCAGCAACTGGTACCGGAACTATTCCTGCTAACTTCACTTCTCTCAACATCTCACTCCGTAGTTCAGGCTCTTCCATGTCTGTTCCATCTCAGCTTAGATCTTCTTATTTCAACCCAAATTTCTCACTTCAACAACGAAGAACACTTTTTCCTGGAATTGGTTTATCATCTTCGGATAACAGCAGCAACAACAACACTTCAATGCTTCTAAATTTTCAATCAAATAACTTAAACCTAACAACAAACATGTTGCAGGCGAAACAAGAGCTTCGAGAAGGAAACGCAAACACGAACGCGCCATCTTCATCAACAACTTTGGATTTATCAGAAACAAGTGGAGGAGAAGAATCCATGGGAGGAGGAAGAAAGAGAAGAACTGGAAGTGAGCAAGATTTATCATCAATACAACATCAAATGGGAAGTTATTTATTGCAATCAAGTGCAGGTTCGATTCCGGCAAGTCATACTCAGATTCCGGCGAATATATGGATGGTGGCTAATTCTAATAACCAAATAATGAGTGGTGGTGATCCTATTTGGACATTTCCGTCGGTGAATAATAGTGCTGCTGCTTTGTATAGAGGAGCAGTTTCAACAAGTGGTTTGCATTTTATGAATTTTCCACAACCTATGGCTTTGATGCCAGGTCAGCAATTAGGTAATTCGTCCGGTGGTGGTGGTGGTGGTGGAGGTGGAGGTGGAGGTAATATCAATATGAATATGAATATGAACATGAATGAAGGACATTTGAGTATGCTCGCCGGTCTTAGTCCTTATCGTCCGGTTACTGATCACCCTCAATCTCATCAACAACAACAACATCAACCAAGTGGATCACAGTCACATCATCGCGGCGGTAGCCATGATGATAGACATGATAATTGA 1338 0.4268 MEGGDDLHHHHHHHHQHLHHQQQQRQNFPFQLLEKKEDNQEAASCSTSSPYTSLAITPISPTEPSTSNSNRSNQLVSAASAPTTSDPGNKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIGLSSSDNSSNNNTSMLLNFQSNNLNLTTNMLQAKQELREGNANTNAPSSSTTLDLSETSGGEESMGGGRKRRTGSEQDLSSIQHQMGSYLLQSSAGSIPASHTQIPANIWMVANSNNQIMSGGDPIWTFPSVNNSAAALYRGAVSTSGLHFMNFPQPMALMPGQQLGNSSGGGGGGGGGGGGNINMNMNMNMNEGHLSMLAGLSPYRPVTDHPQSHQQQQHQPSGSQSHHRGGSHDDRHDN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04196 445 Pfam TCP family transcription factor 97 240 IPR017887 -
Trre15g04196 445 MobiDBLite consensus disorder prediction 42 92 - -
Trre15g04196 445 MobiDBLite consensus disorder prediction 1 111 - -
Trre15g04196 445 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 430 IPR005333 GO:0003700
Trre15g04196 445 MobiDBLite consensus disorder prediction 244 263 - -
Trre15g04196 445 ProSiteProfiles TCP domain profile. 99 153 IPR017887 -
Trre15g04196 445 MobiDBLite consensus disorder prediction 244 285 - -
Trre15g04196 445 MobiDBLite consensus disorder prediction 93 111 - -
Trre15g04196 445 MobiDBLite consensus disorder prediction 407 445 - -
Trre15g04196 445 MobiDBLite consensus disorder prediction 414 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04196 Trre-Chr15 52597320 52598657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04196 90 369 TCP Transcription Factor Family AT3G47620 48.256 7.06e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre15g04196 TCP 6.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04196 - - psat:127073804 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04196 15 52597320 52598657 Trre15g04196 15 52597320 52598657 ECH
Trre9g02650 9 33004330 33005556 Trre15g04196 15 52597320 52598657 PCT