Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04186 ATGGGAAATTGCTTTGGAAGTCGTTCCAAGGTTGATGACCCTTTCAGCTCCCAACCCAATTCTGATATTACAAAAGTTCCTCTTAGAAGCACTCAATTGTTAGCTCATTCAAGTGCAGCAATACATGGATACAGTGATGGACGTAAACCTGAGATTCTACCAACTCCAAGATCTGAAGGGGATATACTATCTTCACCACATTTAAAAGCATTCACATTTAAGGATCTTAGAAATGCCACTAAGAATTTCAGTAATGATTATTTAATTGGACAAGGAGGATTTGGTTATGTCTATAAAGGCTGGATTGATGGTCATTCGCTTAGTGCTGCAAAGCCTGGATCTGGAACTGCTGTTGCTGTCAAGAAGCTTAAGCCTGAAGGCTTTCAAGGCCATAAGGAGTGGTTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTACTGGATATTGCCTTGATGGGGATAACAGGCTTCTAGTCTATGAGTACATGCCTAATGGAAGTTTGGAAGATCATCTATTTCGCAAGGGAACACACATACTTCCTTGGGCAACAAGAATCAAAGTTGCCACTGGCGCTGCTCGAGGTCTCACCTTCCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGACTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGTCCCACTGGTGATCGTTCTCATGTTTCTACTCAAGTCTTGGGCACTCATGGCTATGCTGCTCCTGAATATATTCTTACAGGTCGGCTGACAACAAGGTGCGATGTGTATAGCTTTGGAGTTGTGTTATTAGAACTACTATCAGGACGAAATGCTGTCGACAAAACAAAATCTGGAGCGGAACATAATTTGGTAGATTGGGCAAGACCATATTTGGGCGATAGAAGGAAGTTGTTCCGGATAATGGACACAAGATTAGAAGGGCAGTATCCACATAGGGCAGCTTATACAGCTGCAATTCTTGCATTACAATGTATTAGCGAGGCCAAGTTTAGACCACAAATGTCTGAGGTTTTGACTACTTTGGAACAATTGCCAGTCATCAGACATTCAGCTAGTCCTTCTAGATCAGAGGTGAAACCGATCTCAAGTCCAATGAGAGAGAGATTGTGA 1173 0.4152 MGNCFGSRSKVDDPFSSQPNSDITKVPLRSTQLLAHSSAAIHGYSDGRKPEILPTPRSEGDILSSPHLKAFTFKDLRNATKNFSNDYLIGQGGFGYVYKGWIDGHSLSAAKPGSGTAVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEYMPNGSLEDHLFRKGTHILPWATRIKVATGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTHGYAAPEYILTGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGAEHNLVDWARPYLGDRRKLFRIMDTRLEGQYPHRAAYTAAILALQCISEAKFRPQMSEVLTTLEQLPVIRHSASPSRSEVKPISSPMRERL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04186 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Trre15g04186 390 FunFam Serine/threonine-protein kinase BIK1 53 168 - -
Trre15g04186 390 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g04186 390 Pfam Protein tyrosine and serine/threonine kinase 88 296 IPR001245 GO:0004672|GO:0006468
Trre15g04186 390 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04186 390 PANTHER OS01G0588500 PROTEIN-RELATED 40 365 - -
Trre15g04186 390 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Trre15g04186 390 SUPERFAMILY Protein kinase-like (PK-like) 56 362 IPR011009 -
Trre15g04186 390 Gene3D Phosphorylase Kinase; domain 1 55 168 - -
Trre15g04186 390 FunFam Serine/threonine-protein kinase PBS1 169 380 - -
Trre15g04186 390 Gene3D Transferase(Phosphotransferase) domain 1 169 378 - -
Trre15g04186 390 CDD STKc_IRAK 89 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04186 Trre-Chr15 52464778 52468141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04186 69 362 Glycoside Hydrolase AT3G07070 53.691 2.96e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g04186 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04186 - - gmx:100791844 603.594