Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04181 ATGGTACTAAATCCTTCCAGCTTCTGGACTCAAGCAAACGCGCTTTTCAGAAAGAGCTTAACCTTCCAGAAACGGAACGTCAAGACCAACATTCGACTCATTTTACTCCCATTGATTCTTTGCATTTTATTGGTTCTTCTTCAAAATTTCATCGATACTCAATTAGATAAACCTGAATTCAAATGCGGTTGCGTATGTCCCAATAACAGAAAAATCTGTGATGATTCCGAGAAGCGTTGTGGGGTTCAGTATTCCGAAGATACTCAAGCTGTTTTCTGTAAAATTCCTAATCCACCTGAATGGCCTCCTCTCTTGCAACTTCCTGCTGTATTCTGCAACAAAAATGACTCTTGTCCTTTTAACATGCTTTTCACTGCGCTAAATCGGTCCTTTGCACAAATTATGTCTGACAATATTTTCCCAAGTGCACCCATTGTGAATTCCTCTGATATTATGGCTAGTTTGGCATCAAATGTGCTGGGATCTGCATCACCGCCTGGGGACAACAGTTTTCTTGAACCGGCTTTCACTTCGGGTCTTCCAGTTTATTATCTACTAACTCAGTGCCCTCAGAACAACTCTGGATTCTCATTTCCCTACGAGATAGAAGGCATTACTTTCAAGCAAGACATCAGATGTGGTCAGGGTATAAACTTCTGGCGTAACAATTCTGATGATATCAACAATGAGTTATATCAAGGTTATGAAAGAAATAACTCTGAAGGAAGGATCAATGCGATAATTTCAGCTTTTGATTTTCTAAATTCAAATGGCAATGTATTCGATGTCACTGTATGGTACATGCCAACCAACACCAAGTTTGACAATAAATTGTCACGAGTTCCCCGTTCTGTAAATCTGATATCAAATGCCTACTTGCAGTTTCTGCGTGGACCTGGTACCAAAATGTTATTTGATTTTGTAAAGGAAATGCCAAAATCTGAGACTGCATATAGGATCGAGATAGCTTCTCTCCTGGGCGGTCTGTTCTTTACATGGGTCATCCTTCAACTTTTTCCGGTTGTTCTGACATCACTGGTTTATGAGAAGCAGCACAAATTAAGAATCATGATGAAAATGCACGGTCTTGGTGATGGGCCATATTGGATGATTACTTATGGTTATTTTCTTGTACTATCAGTGATCTACATGTTGTGCTTTGTGATATTCGGCTCAGTCTTAGGATTAAAATTCTTCACCTTGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAACTTACAAATATCATTGGCATTTCTGTTGTCTTCTGTTTTTTCAAATGTGAAGACTGCTACAGTAAGCGCATATATAGGGGTCTTTGGAACCGGGCTATTAGGTGGATTTCTTTTCGACTATTTTCTTCAAGATTCATCATTTCCAAGAAAATGGGTGATTTGTATGGAGTTGTATCCCGGGTTTGCTTTATATCGTGGATTATGGGAGTTTGCACAGTCTGCCACCACAGGCAATAACTCGGGGACTGATGGTATGCGGTGGCCGGATCTGAGCGATAGTACAAATGGAATGAAAGAGGTCTTAATTATCATGTTTGTTGAGTGGACATTAGCGCTTTTTGTTGCTTATTACATCGACCAAGTATTATCGACAGGAAGTGGAAAAAGTCCTCTTTTCTTCTTAAAAGGATTTCAGAAAAAACATCATTCATCATTCAAGAAGCTAAGTAGTCAAAGGCAGGGGTCAAAAGTTTTGGCTCACACGGGGAAACCTGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGCTTCTACTTGAGCCAACCATTGATCATGCAATTGTTTGCGACGACCTAAAAAAATTCTATCCAGGAAGAGATGGAAATCCAGGGAAATTTGCAGTGAGAGAATTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACATCAGGTGCGGCATATGTTCAAGGCCTGGACATAAGAACTCATATGGCTGCAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTAAAAAATCTTAAAGGTTCAGCCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAATTTAAACCTTTTCCATGGAGGGGTTGCTGATAAAAAAGCTGCAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGACCCCAAAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGTTATCAAGCTTGCAAAACGGGATCGTGCAATCATTCTTACCACACATTCTATGGAAGAGGCAGAGACGCTATGTGATCGATTGGGAATTTTTGTAGATGGTAGTTTGCAATGTATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACCTATGTGTTCACAATGACAACATCTTCAGACCACGAGAAGGATGTGGAGAACATGGTACGACAACTCACCCCAAATGCCAACAAGATATACCATCTCTCGGGCACCCAGAAATTTGAGCTGCCAAAAGAGGATGTTAAAATAGCGAATGTATTCCAAGCTGTTGAAGTTGCAAAAAGAAACTTCACTGTTTTTGCATGGGGTTTAGCTGATACCACATTAGAAGATGTCTTCATTAAGGTAGCACGCCATGCTCAGGCATTTGATACCTGGTCATAG 2775 0.4083 MVLNPSSFWTQANALFRKSLTFQKRNVKTNIRLILLPLILCILLVLLQNFIDTQLDKPEFKCGCVCPNNRKICDDSEKRCGVQYSEDTQAVFCKIPNPPEWPPLLQLPAVFCNKNDSCPFNMLFTALNRSFAQIMSDNIFPSAPIVNSSDIMASLASNVLGSASPPGDNSFLEPAFTSGLPVYYLLTQCPQNNSGFSFPYEIEGITFKQDIRCGQGINFWRNNSDDINNELYQGYERNNSEGRINAIISAFDFLNSNGNVFDVTVWYMPTNTKFDNKLSRVPRSVNLISNAYLQFLRGPGTKMLFDFVKEMPKSETAYRIEIASLLGGLFFTWVILQLFPVVLTSLVYEKQHKLRIMMKMHGLGDGPYWMITYGYFLVLSVIYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISLAFLLSSVFSNVKTATVSAYIGVFGTGLLGGFLFDYFLQDSSFPRKWVICMELYPGFALYRGLWEFAQSATTGNNSGTDGMRWPDLSDSTNGMKEVLIIMFVEWTLALFVAYYIDQVLSTGSGKSPLFFLKGFQKKHHSSFKKLSSQRQGSKVLAHTGKPDVIQEREKVEQLLLEPTIDHAIVCDDLKKFYPGRDGNPGKFAVRELFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVQGLDIRTHMAAIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKNLNLFHGGVADKKAAKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKRDRAIILTTHSMEEAETLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSSDHEKDVENMVRQLTPNANKIYHLSGTQKFELPKEDVKIANVFQAVEVAKRNFTVFAWGLADTTLEDVFIKVARHAQAFDTWS 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04181 924 Gene3D - 594 868 IPR027417 -
Trre15g04181 924 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 839 IPR003439 GO:0005524
Trre15g04181 924 Pfam ABC-2 family transporter protein 311 483 IPR013525 GO:0016020|GO:0140359
Trre15g04181 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 830 IPR027417 -
Trre15g04181 924 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 569 918 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trre15g04181 924 FunFam ABC transporter A family member 7 591 867 - -
Trre15g04181 924 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Trre15g04181 924 SMART AAA_5 632 815 IPR003593 GO:0016887
Trre15g04181 924 Pfam ABC transporter 627 768 IPR003439 GO:0005524
Trre15g04181 924 CDD ABC_subfamily_A 606 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04181 Trre-Chr15 52403307 52412756 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04181 611 850 Calmodulin-binding Proteins AT2G36910 23.810 1.43e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04181 - - tpra:123887097 1409.43