Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04178 ATGGTATATCCTGCCCCTTCCCCTGTCACCTTCTGGACTCAGGCAAATGCACTTATCAGGAAGAATTTAACTTTCCAGAAACGGAATGTGAAGACCAACATTCGGCTTATTTTGTTCCCGATGATCATTTGCGTCTTGCTGATTCTTGTTCAAAGTATACTTGACATTGAATTGGATAAATCAGAGTTCAAATGTGGCTGCATCTGTGTAAACAACAAAACAAGATGTGATGATTCAGAGAAGGTTTGTGGAGTTGGGTATTCAGATCAGATTCAAGTTCAAACCTGTGCTGTTCCTAATCCACCTGAATGGCCTCCTCTCTTGCAACTTCCTGCCGTGTCATGCAAGACAACTGCCTCCTGTTCTTTTACCATGCTCTTCACTGCCAACAATCACTCCTTTGGACAGAGTGTGTCTAAAAATATGTTCCCAAGTGCCTTAACTATGAATTACTCTCATAACATGGCTAGTTTGGCACCAAATGTGCTGGGATCTGAATCAATGACCGAGGTCAACAATTTGCATGAACCTGCTTTCACTTTAGAGCTTCCCATTTATTATTTACAAACTCAGTGCCCTCAAAACAACTCAGGATTCTCATTTCCCTACCAGATAGCAACCACTACTGAACAACAAGAAATCAAATGTGCTCACGGTATAAACTTATGGCGTAACAGTTCTTCTGAGATCAACACTGAGTTATACAAAGGTTATCATAGAGTTAACCCTGAAGGACAAATCAATGAAATATTTTCAGCATTTGATTTTCTAAATTCAAATCGGGATGGATTCAATGTTACTGTATGGTACAATTCAACCTACAAGGGTAACACTAGTTTGGCCCCTACTGCATTGTTGCGAATTCCTCGTTCTGTAAATCTGATATCGAATGCGTACCTGCAGTTTCTGCGTGGACCTGGTACCAAAATGATATTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCATTTAGGATTGAGATAGCTTCTCTCCTTGGCAGTTTGTTCTTTACATGGGTAGTCCTGCAACTTTTCCCGGTTGTTTTGACATCACTGGTATATGAGAAGCAACACAAGTTAAGAATCATGATGAAGATGCATGGTCTTGGTGATGTGCCATATTGGACTATTTCATATGGTTATTTTCTTGCCTTATCAATGATCTACATGTCGTGTTTTGTGATATTTGGCTCAATCTTAGGATTTAAACTCTTCATCCTGAATGACTACAGCATCCAATTCATCTTTTACTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGTTGGCTTCATTTTTTTCGAATGTTAAAACTGCTACAGTAACTACATATATAGGCGTCTTTGGAACCGGACTATTAGCCGGCTTTCTTTTCCAATTTTTAGTTCAAGATACATCGTTTTCAAGAGGATGGATCATTTGTATGGAGTTGTATCCCGGGTTTTCTCTATATCGCGGGTTATATGAGTTTTCACAGTCTGCCTCCGGTGGCAATAATTGGGGGACTGATGGTATGCAGTGGAAGGATCTGAGAGATGGCGTCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATAGTAGTACTTTTTGTTGCTTATTACATCGATCAAGTATTGTCAACAAGAAGTGGAAAAGGTCCTCTATTCTTCTTGAAAGGATTTCAGAAAAAATCTCTTCCATCGTTGAAGAAGCCAAGTATTCAAAGGCAAGGTTCAAAAGTTTTCGCTCAAATGGAGAAACCCGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGATACTACATGAACCAATCATTAATCATGCAATTGTCTGCGACAACCTAAATAAATTCTATCCAAGAAGGGATGGAAATCCATGGAAATTTGCCGTGAAAGAATTGTTCCTTGCGGTGCCACGAGGGGAATGCTTCGGTATGCTTGGTCCAAATGGTGCTGGGAAGAGTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACATCTGGTGCAGCATATGTCCAAGGCCAGGACATAAGAATTCATATGGATGGAATATATACTAGCATGGGAGTATGCCCACAACACGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTTAAAAATCTTACAGGTTCAATCTTGAGTCAAGCAGTAGAAGAATCTTTGAAGAATTTAAACCTTTTCCATGGAGGGGTTGCTGATAAGCAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGACCCCAAAGTTGTTTATATGGATGAGCCAAGTACCGGATTAGACCCTGCTTCAAGGAGATGCCTTTGGAATGTTATCAAGCTTGCGAAACGGGATCGTGCAATCATTTTAACCACACATTCAATGGAAGAGGCAGAAGCTTTATGTGATCGATTAGGAATATTTGTAAATGGGGCCTTGCAGTGCGTCGGAAATCCAAAAGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCGGATCACGAGAAGGATGTGGAGAACATGGCACAACAGCTCACCCCAAACGCCAACAAGATATACCATCTCTGTGGCACGCAGAAATTTGAATTGCCAAAAGACGATGTTAAAATAGCGAATGTATTGGAAGCTGTTGAAGTTGCAAAAAGAAACTTCAATGTTTTTGCATGGGGTTTAGCTGATACCACATTAGAATATGTCTTCATCAAAGTAGTACGTGAGGCTCAAGCATTTGATATCTTGTCATAA 2796 0.4031 MVYPAPSPVTFWTQANALIRKNLTFQKRNVKTNIRLILFPMIICVLLILVQSILDIELDKSEFKCGCICVNNKTRCDDSEKVCGVGYSDQIQVQTCAVPNPPEWPPLLQLPAVSCKTTASCSFTMLFTANNHSFGQSVSKNMFPSALTMNYSHNMASLAPNVLGSESMTEVNNLHEPAFTLELPIYYLQTQCPQNNSGFSFPYQIATTTEQQEIKCAHGINLWRNSSSEINTELYKGYHRVNPEGQINEIFSAFDFLNSNRDGFNVTVWYNSTYKGNTSLAPTALLRIPRSVNLISNAYLQFLRGPGTKMIFEFVKEMPKPETPFRIEIASLLGSLFFTWVVLQLFPVVLTSLVYEKQHKLRIMMKMHGLGDVPYWTISYGYFLALSMIYMSCFVIFGSILGFKLFILNDYSIQFIFYFIYINLQISLAFLLASFFSNVKTATVTTYIGVFGTGLLAGFLFQFLVQDTSFSRGWIICMELYPGFSLYRGLYEFSQSASGGNNWGTDGMQWKDLRDGVNGMKEVLIIMFAEWIVVLFVAYYIDQVLSTRSGKGPLFFLKGFQKKSLPSLKKPSIQRQGSKVFAQMEKPDVIQEREKVEQILHEPIINHAIVCDNLNKFYPRRDGNPWKFAVKELFLAVPRGECFGMLGPNGAGKSSFISMMIGLTKPTSGAAYVQGQDIRIHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLTGSILSQAVEESLKNLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRRCLWNVIKLAKRDRAIILTTHSMEEAEALCDRLGIFVNGALQCVGNPKELKGRYGGTYVFTMTTSSDHEKDVENMAQQLTPNANKIYHLCGTQKFELPKDDVKIANVLEAVEVAKRNFNVFAWGLADTTLEYVFIKVVREAQAFDILS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04178 931 Gene3D - 600 875 IPR027417 -
Trre15g04178 931 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 580 925 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trre15g04178 931 SMART AAA_5 639 822 IPR003593 GO:0016887
Trre15g04178 931 CDD ABC_subfamily_A 613 834 - -
Trre15g04178 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 837 IPR027417 -
Trre15g04178 931 Pfam ABC-2 family transporter protein 243 540 IPR013525 GO:0016020|GO:0140359
Trre15g04178 931 FunFam ABC transporter A family member 7 598 874 - -
Trre15g04178 931 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Trre15g04178 931 Pfam ABC transporter 632 775 IPR003439 GO:0005524
Trre15g04178 931 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 609 846 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04178 Trre-Chr15 52370298 52376411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04178 613 857 Calmodulin-binding Proteins AT2G36910 23.016 2.10e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04178 - - tpra:123887097 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04178 15 52370298 52376411 Trre15g04178 15 52370298 52376411 ECH