Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04177 ATGGGTAAATCACCTGGAAAATGGATCAAAACTGTACTGTTTGGGAAGAAATCATCCAAATCAAATATACCAAGAGGAAGAGAGCTTGTTAATCAAAAGGAAGGAGTTGTTGCTTCCAAGGTTTCAGAAACTGGTTTAGCTTTAGAGCCAACCACCAATACTATTCCCAGACACGAGGAAGACTTGGAGCTGGAGAACAAAGAAGCAGAAAATGTTTTGCCTGGGAATCAAGAAATTGACACAGTGGAACCTGTTAATCAAGATGCACCAATTGATCCAGAGACATTGAAGCTGGAGGAAGCAGCCACGAAAGCTCAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCTTTTAGGGCCCTAAAAGGCATAATAAGGTTACAAGCACTTATTCGCGGACACTTGGTTAGAAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTGTCAAACTACAAGCACTTGGTCGTGGACAAAGTGTTAGAAAGTCTGATGTCGGATTTGAAATTCAAGAGAAGTGCATTCTATTGAAGTTTCAGGATGACAAACCTGGCAAACCAATTACCGTATCTGGTAAAATTATGAAGCTGTCAGCTAACACTTTCATTCGTAAGCTTATTACTTCATCAACTACAATAATGGCCCTGCGTTTGCAATATGTTCCTGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGTTGGTCAGCATCTTGGTTTTGGAAGCCAATTCCTCAACCGAAGAAAATTCGGGATACTAAGCCTCAGAAAAGGCATGGTAATATTTCAACTGGAGATGCTCAAACGAGCAAGTCAAAACGTACCCACAGGAAACTTCCTACTGCAAATCCTGACCTAGCCCCATCACAAGCAAATCCTGAAATTGAAAAACCAAAACGAAATATAAGGAAATATCCAAGCCAACCCTCGGATCCTGTGCTGGAAAATCCCCAGATTGAGCTTGAGAAGGTTAAACGTAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGACTGCAATTCTGTCAGAAGTTGAATCTGAGACTCTAAAGCCGAATGTGGAAAAGGAAACGGTTGCCTCCGGTGTTGATGTTTCAGTACCTGCGGTCATTAGTTCTAATGGGAAGATTAAGAAGGAAGCAACACTAACCATTTCCAGGGAGCCAGATATTGGAATTACTCATGGAGATTTGATTACTAAGGAGGTGTTTGACACTCCAAGCAGTTATCAGGTCAATGCGGAATCAAAGCCCTTGACAGATATTACAAGCAAAGATAAAAACATTTCTGACGATGAAGTGAAAAATGATCCCATAGATTTAGTAGAGACTATTGGCAAAGATGAAAATTCTAACTTAACAAATGGAGGTTTGAGTCACAAGGAAGATCAAACGGGCAGTGAAAATCAGAAACCAACCCGAAAAGCCTCAATTGTAGCTAAGCAGGAACGTGCAGAGAATGGTTTGCACAATAGTCCGACAATACCAAGTTATATGGCAGCAACTGAATCTGCAAAGGCAAAATTGAGGGCTCAAGGATCCCCAAAAGTTGGACAAGATGGAAGTGAGAAAAACAACAATGCTCGGCGACAGTCTCTGCCATCTTCAACTAACAGCAAAATCAGTTCTCATTCACCTAAAATACAGAGACCAACTCAGTCAGGTGGTAAGGTGGGCCACAAAAGTGACAAAGCTGTATCATCTTCTAGAGATGGAAATGCGAAGGTAGTTCAAGCAGAATGGAAGAGGTGA 1752 0.4161 MGKSPGKWIKTVLFGKKSSKSNIPRGRELVNQKEGVVASKVSETGLALEPTTNTIPRHEEDLELENKEAENVLPGNQEIDTVEPVNQDAPIDPETLKLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQALGRGQSVRKSDVGFEIQEKCILLKFQDDKPGKPITVSGKIMKLSANTFIRKLITSSTTIMALRLQYVPGDPNSVLSWLERWSASWFWKPIPQPKKIRDTKPQKRHGNISTGDAQTSKSKRTHRKLPTANPDLAPSQANPEIEKPKRNIRKYPSQPSDPVLENPQIELEKVKRNLRKVHNPVVETAILSEVESETLKPNVEKETVASGVDVSVPAVISSNGKIKKEATLTISREPDIGITHGDLITKEVFDTPSSYQVNAESKPLTDITSKDKNISDDEVKNDPIDLVETIGKDENSNLTNGGLSHKEDQTGSENQKPTRKASIVAKQERAENGLHNSPTIPSYMAATESAKAKLRAQGSPKVGQDGSEKNNNARRQSLPSSTNSKISSHSPKIQRPTQSGGKVGHKSDKAVSSSRDGNAKVVQAEWKR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04177 583 PANTHER IQ-DOMAIN 5-RELATED 1 542 - -
Trre15g04177 583 MobiDBLite consensus disorder prediction 447 463 - -
Trre15g04177 583 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Trre15g04177 583 MobiDBLite consensus disorder prediction 420 444 - -
Trre15g04177 583 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Trre15g04177 583 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Trre15g04177 583 Pfam Protein of unknown function (DUF4005) 482 562 IPR025064 -
Trre15g04177 583 MobiDBLite consensus disorder prediction 518 556 - -
Trre15g04177 583 SMART iq_5 97 119 IPR000048 GO:0005515
Trre15g04177 583 SMART iq_5 120 141 IPR000048 GO:0005515
Trre15g04177 583 ProSiteProfiles IQ motif profile. 122 144 IPR000048 GO:0005515
Trre15g04177 583 Gene3D - 95 144 - -
Trre15g04177 583 MobiDBLite consensus disorder prediction 247 315 - -
Trre15g04177 583 MobiDBLite consensus disorder prediction 411 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04177 Trre-Chr15 52365253 52368654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04177 1 583 IQD Protein Family AT1G74690 44.318 1.43e-127 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04177 - - gmx:100807118 843.188